Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 RNU6-260P-201ENST00000384092 107 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 MIR568-201ENST00000385036 95 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 MIR1302-3-201ENST00000408128 138 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 AC006254.2-201ENST00000603259 279 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 U7.2-201ENST00000607576 63 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 AC132825.6-201ENST00000638861 357 ntBASIC-1.37□□□□□ -2.63
ZNF404Q494X3 RNU6-924P-201ENST00000362926 108 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 RNU6-797P-201ENST00000363101 109 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 SNORD58C-201ENST00000365223 64 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 MIR29B1-201ENST00000385015 81 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 snoU13.17-201ENST00000458802 104 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.38□□□□□ -2.63
ZNF404Q494X3 RNU6-382P-201ENST00000365181 106 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 RNU6-738P-201ENST00000384531 106 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 RNU6-861P-201ENST00000516745 106 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 MIR4679-2-201ENST00000578358 77 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 MIR3613-201ENST00000579844 87 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 AC138207.3-201ENST00000585289 166 ntBASIC-1.39□□□□□ -2.63
ZNF404Q494X3 SNORD115-33-201ENST00000363723 82 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 SNORA33.1-201ENST00000364957 130 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 MIR1255B2-201ENST00000408618 67 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 RNU7-120P-201ENST00000459334 63 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 RNU6-479P-201ENST00000516348 105 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 MIR548Z-201ENST00000584743 97 ntBASIC-1.4□□□□□ -2.63
ZNF404Q494X3 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.4□□□□□ -2.63
ZNF404Q494X3 RNU6-682P-201ENST00000363843 106 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 SNORD45B-201ENST00000364617 72 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 RNU6-813P-201ENST00000384691 107 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 RNA5SP292-201ENST00000390974 118 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 SNORA26.4-201ENST00000391188 123 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 MTATP6P29-201ENST00000415057 132 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-1.41□□□□□ -2.64
ZNF404Q494X3 MIR548X2-201ENST00000579776 100 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 AC103810.7-201ENST00000607821 91 ntBASIC-1.41□□□□□ -2.64
ZNF404Q494X3 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 SNORA2.1-201ENST00000363089 137 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
ZNF404Q494X3 SNORD90-201ENST00000391145 111 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 AC026421.1-201ENST00000519101 163 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 CYP3A54P-201ENST00000566950 75 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 MIR4320-201ENST00000636981 65 ntBASIC-1.42□□□□□ -2.64
ZNF404Q494X3 RNA5SP331-201ENST00000364986 107 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 RNU6-519P-201ENST00000410590 108 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 SNORD63.1-201ENST00000516178 80 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 RNA5SP461-201ENST00000516451 104 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 SNORA18.5-201ENST00000516616 101 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 AL035470.1-201ENST00000622571 220 ntBASIC-1.43□□□□□ -2.64
ZNF404Q494X3 RNU6-746P-201ENST00000384112 109 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 RNU7-134P-201ENST00000458997 64 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 AL117351.2-201ENST00000513571 157 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 RNA5SP147-201ENST00000516493 109 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 MIR3657-201ENST00000584818 117 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 MIR6509-201ENST00000614603 85 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 AL627230.5-201ENST00000619807 58 ntBASIC-1.44□□□□□ -2.64
ZNF404Q494X3 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 RNU6-824P-201ENST00000363724 104 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 MIR6818-201ENST00000621576 65 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 MIR4773-1-201ENST00000637203 78 ntBASIC-1.45□□□□□ -2.64
ZNF404Q494X3 SNORD116-18-201ENST00000383961 92 ntBASIC-1.46□□□□□ -2.64
ZNF404Q494X3 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.46□□□□□ -2.64
ZNF404Q494X3 MIR548I1-201ENST00000408810 149 ntBASIC-1.46□□□□□ -2.64
ZNF404Q494X3 RNU7-154P-201ENST00000516194 62 ntBASIC-1.46□□□□□ -2.64
ZNF404Q494X3 RNU5F-1-201ENST00000362507 117 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 MIR203A-201ENST00000384836 110 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 MIR8485-201ENST00000401372 91 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 RNU6-394P-201ENST00000410735 107 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 HLA-S-202ENST00000425174 53 ntBASIC-1.47□□□□□ -2.64
ZNF404Q494X3 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 Y_RNA.193-201ENST00000363979 102 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 MIR521-2-201ENST00000384818 87 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 MIR569-201ENST00000385228 96 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 RNU6-576P-201ENST00000390854 102 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.48□□□□□ -2.65
ZNF404Q494X3 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.49□□□□□ -2.65
ZNF404Q494X3 MTND3P2-201ENST00000438452 342 ntBASIC-1.49□□□□□ -2.65
ZNF404Q494X3 AL691482.2-201ENST00000457453 84 ntBASIC-1.49□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms