Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 RNU6-238P-201ENST00000363313 106 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 MTATP6P21-201ENST00000440681 189 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 MIR3064-201ENST00000581130 66 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 AC080013.6-201ENST00000606185 215 ntBASIC-1.47□□□□□ -2.64
CHD9Q3L8U1 SNORD115-22-201ENST00000364456 82 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 RNU6-290P-201ENST00000365212 101 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 RNU6-630P-201ENST00000391258 106 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 SNORA40.15-201ENST00000516884 107 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 SNORD114-13-201ENST00000364377 74 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNU6-310P-201ENST00000384655 107 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 AL513043.2-201ENST00000573941 143 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 AL132765.2-201ENST00000610812 351 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNY4P14-201ENST00000363656 96 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNU6-141P-201ENST00000410499 105 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU6-768P-201ENST00000384683 107 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR548A3-201ENST00000385297 97 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR1302-6-201ENST00000408466 90 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR548AG1-201ENST00000579932 66 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 SNORD45B-201ENST00000364617 72 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU7-85P-201ENST00000458851 63 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 AL035461.1-201ENST00000421490 332 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 AC104996.3-201ENST00000590718 94 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU5F-1-201ENST00000362507 117 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-151P-201ENST00000364158 107 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-718P-201ENST00000516166 105 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-506P-201ENST00000516553 94 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 SNORD116.3-201ENST00000517176 78 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-563P-201ENST00000364872 108 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 MTND3P2-201ENST00000438452 342 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.51-201ENST00000362725 102 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-478P-201ENST00000363904 110 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC092794.1-201ENST00000612734 582 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 U2.18-201ENST00000622185 84 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-129P-201ENST00000391022 107 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-656P-201ENST00000516785 107 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC130289.1-201ENST00000577321 73 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC078883.4-201ENST00000623218 367 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.9-201ENST00000362354 101 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-340P-201ENST00000364005 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 SNORA33.1-201ENST00000364957 130 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-816P-201ENST00000390914 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-508P-201ENST00000363231 103 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 SNORD116-10-201ENST00000363791 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-326P-201ENST00000365480 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 MIR548P-201ENST00000408336 84 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 MIR548Q-201ENST00000408404 100 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 SNORD116-2-201ENST00000384274 95 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 MIR577-201ENST00000385196 96 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 RNU6-823P-201ENST00000391042 103 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 U4.4-201ENST00000620626 117 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 MIR6844-201ENST00000637122 62 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 SNORA75.5-201ENST00000391291 81 ntBASIC-1.53□□□□□ -2.66
CHD9Q3L8U1 U4.5-201ENST00000617137 123 ntBASIC-1.53□□□□□ -2.66
CHD9Q3L8U1 MIR379-201ENST00000362218 67 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 snoU13.10-201ENST00000459301 103 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 MTND3P3-201ENST00000505004 126 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 SNORA18.5-201ENST00000516616 101 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 MIR3974-201ENST00000637126 96 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.54□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms