Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 SNORA8.2-201ENST00000384372 139 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 MIR520E-201ENST00000384867 87 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 AC069503.3-201ENST00000618674 145 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 RNU6-668P-201ENST00000364180 107 ntBASIC1.1□□□□□ -2.23
EPHB3P54753 AC110620.1-201ENST00000416042 228 ntBASIC1.1□□□□□ -2.23
EPHB3P54753 SNORD114-21-201ENST00000606412 72 ntBASIC1.1□□□□□ -2.23
EPHB3P54753 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
EPHB3P54753 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
EPHB3P54753 RNU6-716P-201ENST00000365621 103 ntBASIC1.09□□□□□ -2.23
EPHB3P54753 Y_RNA.375-201ENST00000365625 101 ntBASIC1.09□□□□□ -2.23
EPHB3P54753 RNU6-269P-201ENST00000391077 97 ntBASIC1.09□□□□□ -2.23
EPHB3P54753 MIR6734-201ENST00000621166 68 ntBASIC1.09□□□□□ -2.23
EPHB3P54753 AL162376.1-201ENST00000624117 175 ntBASIC1.09□□□□□ -2.23
EPHB3P54753 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
EPHB3P54753 RNU6-645P-201ENST00000364649 106 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 SNORD114-24-201ENST00000365029 72 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 RPS29P1-201ENST00000465274 159 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 OR2A41P-201ENST00000473586 105 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 RNA5SP255-201ENST00000516370 107 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 MIR6767-201ENST00000637302 66 ntBASIC1.08□□□□□ -2.24
EPHB3P54753 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
EPHB3P54753 RNU6-990P-201ENST00000364385 104 ntBASIC1.07□□□□□ -2.24
EPHB3P54753 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
EPHB3P54753 MIR6739-201ENST00000622461 75 ntBASIC1.07□□□□□ -2.24
EPHB3P54753 SNORD114-4-201ENST00000363962 75 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 Y_RNA.250-201ENST00000364542 110 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 RNU4-45P-201ENST00000365469 141 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 RNA5SP484-201ENST00000458857 111 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 RNU6-542P-201ENST00000516405 103 ntBASIC1.06□□□□□ -2.24
EPHB3P54753 RNU4-38P-201ENST00000364472 129 ntBASIC1.05□□□□□ -2.24
EPHB3P54753 RNU6-499P-201ENST00000365615 107 ntBASIC1.05□□□□□ -2.24
EPHB3P54753 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.05□□□□□ -2.24
EPHB3P54753 MIR18A-201ENST00000362310 71 ntBASIC1.04□□□□□ -2.24
EPHB3P54753 RNU6-656P-201ENST00000516785 107 ntBASIC1.04□□□□□ -2.24
EPHB3P54753 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
EPHB3P54753 SNORA36.1-201ENST00000363424 132 ntBASIC1.03□□□□□ -2.24
EPHB3P54753 RNU5B-6P-201ENST00000516765 68 ntBASIC1.03□□□□□ -2.24
EPHB3P54753 AC018659.1-201ENST00000551083 169 ntBASIC1.03□□□□□ -2.24
EPHB3P54753 MIR6788-201ENST00000618842 66 ntBASIC1.03□□□□□ -2.24
EPHB3P54753 MIR532-201ENST00000385025 91 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 SNORD99-201ENST00000408612 74 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 RNA5SP227-201ENST00000516184 113 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 MIR4661-201ENST00000582720 75 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 MIR151B-201ENST00000584249 96 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 MIR6857-201ENST00000613267 93 ntBASIC1.02□□□□□ -2.25
EPHB3P54753 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
EPHB3P54753 RNA5SP215-201ENST00000363440 122 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 RNA5SP147-201ENST00000516493 109 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 AC011195.1-201ENST00000578177 177 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 AC211469.2-201ENST00000605461 205 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 AC092634.7-201ENST00000621022 103 ntBASIC1.01□□□□□ -2.25
EPHB3P54753 MTND4LP19-201ENST00000403051 166 ntBASIC1□□□□□ -2.25
EPHB3P54753 SCARNA21.1-201ENST00000515996 128 ntBASIC1□□□□□ -2.25
EPHB3P54753 RNA5SP268-201ENST00000516828 124 ntBASIC1□□□□□ -2.25
EPHB3P54753 RNA5SP94-201ENST00000516917 108 ntBASIC1□□□□□ -2.25
EPHB3P54753 RNU6-1223P-201ENST00000517124 104 ntBASIC1□□□□□ -2.25
EPHB3P54753 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1□□□□□ -2.25
EPHB3P54753 RNU6-1089P-201ENST00000516473 104 ntBASIC0.99□□□□□ -2.25
EPHB3P54753 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.99□□□□□ -2.25
EPHB3P54753 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
EPHB3P54753 MIR373-201ENST00000362273 69 ntBASIC0.98□□□□□ -2.25
EPHB3P54753 RNU6-1162P-201ENST00000384443 104 ntBASIC0.98□□□□□ -2.25
EPHB3P54753 MIR521-2-201ENST00000384818 87 ntBASIC0.98□□□□□ -2.25
EPHB3P54753 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.98□□□□□ -2.25
EPHB3P54753 MIR7107-201ENST00000611489 80 ntBASIC0.98□□□□□ -2.25
EPHB3P54753 SNORA25.5-201ENST00000363782 126 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 Y_RNA.407-201ENST00000383986 113 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 RNA5SP299-201ENST00000391203 116 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
EPHB3P54753 SCARNA17.3-201ENST00000516381 125 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 AC022709.1-201ENST00000615967 87 ntBASIC0.97□□□□□ -2.25
EPHB3P54753 RNU6-987P-201ENST00000384759 104 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 AC006210.1-201ENST00000424882 111 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 AC079150.2-201ENST00000443733 78 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 AL157398.1-201ENST00000452981 186 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 Y_RNA.633-201ENST00000459107 95 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
EPHB3P54753 SNORD110-201ENST00000408189 75 ntBASIC0.95□□□□□ -2.26
EPHB3P54753 AC021146.9-201ENST00000512503 156 ntBASIC0.95□□□□□ -2.26
EPHB3P54753 MIR548AE1-201ENST00000583292 70 ntBASIC0.95□□□□□ -2.26
EPHB3P54753 AL353765.1-201ENST00000605514 183 ntBASIC0.95□□□□□ -2.26
EPHB3P54753 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.95□□□□□ -2.26
EPHB3P54753 SNORA63.6-201ENST00000364921 119 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 RNU6-302P-201ENST00000365249 107 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 SNORA15B-2-201ENST00000384058 135 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 SNORA15B-1-201ENST00000384334 135 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 MIR633-201ENST00000384821 98 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 MIR652-201ENST00000385278 98 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
EPHB3P54753 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.94□□□□□ -2.26
EPHB3P54753 MIR6515-201ENST00000619843 57 ntBASIC0.94□□□□□ -2.26
EPHB3P54753 RNU6-940P-201ENST00000363433 104 ntBASIC0.93□□□□□ -2.26
EPHB3P54753 RNU4-37P-201ENST00000410214 84 ntBASIC0.93□□□□□ -2.26
EPHB3P54753 snoU13.13-201ENST00000458842 104 ntBASIC0.93□□□□□ -2.26
EPHB3P54753 CYP3A137P-201ENST00000562436 69 ntBASIC0.93□□□□□ -2.26
EPHB3P54753 MIR4698-201ENST00000577795 80 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 195.9 ms