Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 MIR320A-201ENST00000385302 82 ntBASIC1.84□□□□□ -2.11
PRIM1P49642 RNU6-1089P-201ENST00000516473 104 ntBASIC1.84□□□□□ -2.11
PRIM1P49642 RNA5SP299-201ENST00000391203 116 ntBASIC1.83□□□□□ -2.12
PRIM1P49642 MIR3678-201ENST00000578455 94 ntBASIC1.83□□□□□ -2.12
PRIM1P49642 MIR6078-201ENST00000611069 100 ntBASIC1.83□□□□□ -2.12
PRIM1P49642 SNORA15B-2-201ENST00000384058 135 ntBASIC1.82□□□□□ -2.12
PRIM1P49642 SNORA15B-1-201ENST00000384334 135 ntBASIC1.82□□□□□ -2.12
PRIM1P49642 MIR633-201ENST00000384821 98 ntBASIC1.82□□□□□ -2.12
PRIM1P49642 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.81□□□□□ -2.12
PRIM1P49642 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.81□□□□□ -2.12
PRIM1P49642 RNU6-656P-201ENST00000516785 107 ntBASIC1.81□□□□□ -2.12
PRIM1P49642 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRIM1P49642 MIR521-2-201ENST00000384818 87 ntBASIC1.8□□□□□ -2.12
PRIM1P49642 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.8□□□□□ -2.12
PRIM1P49642 MIR3612-201ENST00000579753 87 ntBASIC1.8□□□□□ -2.12
PRIM1P49642 MIR466-201ENST00000580653 84 ntBASIC1.8□□□□□ -2.12
PRIM1P49642 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.79□□□□□ -2.12
PRIM1P49642 RNA5SP327-201ENST00000362494 101 ntBASIC1.79□□□□□ -2.12
PRIM1P49642 RNU1-93P-201ENST00000364704 169 ntBASIC1.79□□□□□ -2.12
PRIM1P49642 RNU6-716P-201ENST00000365621 103 ntBASIC1.79□□□□□ -2.12
PRIM1P49642 uc_338.10-201ENST00000621872 182 ntBASIC1.79□□□□□ -2.12
PRIM1P49642 RNU6-997P-201ENST00000384725 107 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 RNU6-269P-201ENST00000391077 97 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 RNU6-92P-201ENST00000605893 104 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 AC022709.1-201ENST00000615967 87 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 AL162376.1-201ENST00000624117 175 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 MIR6828-201ENST00000636181 60 ntBASIC1.78□□□□□ -2.12
PRIM1P49642 RNA5SP192-201ENST00000364404 120 ntBASIC1.77□□□□□ -2.13
PRIM1P49642 SNORD114-27-201ENST00000363766 70 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 RNU6-990P-201ENST00000364385 104 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 SNORD114-24-201ENST00000365029 72 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PRIM1P49642 MIR520E-201ENST00000384867 87 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 RNA5SP147-201ENST00000516493 109 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 RNU6-122P-201ENST00000516818 107 ntBASIC1.76□□□□□ -2.13
PRIM1P49642 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
PRIM1P49642 MIR758-201ENST00000390227 88 ntBASIC1.75□□□□□ -2.13
PRIM1P49642 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.75□□□□□ -2.13
PRIM1P49642 Y_RNA.407-201ENST00000383986 113 ntBASIC1.74□□□□□ -2.13
PRIM1P49642 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
PRIM1P49642 RNA5SP61-201ENST00000516453 100 ntBASIC1.74□□□□□ -2.13
PRIM1P49642 MIR3660-201ENST00000584845 100 ntBASIC1.74□□□□□ -2.13
PRIM1P49642 SNORD114-26-201ENST00000363543 72 ntBASIC1.73□□□□□ -2.13
PRIM1P49642 RNA5SP227-201ENST00000516184 113 ntBASIC1.73□□□□□ -2.13
PRIM1P49642 RNU6-829P-201ENST00000363700 112 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 SNORD113-2-201ENST00000391082 72 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 RNA5SP484-201ENST00000458857 111 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 RPS29P1-201ENST00000465274 159 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 SNORA40.17-201ENST00000517256 115 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.72□□□□□ -2.13
PRIM1P49642 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.72□□□□□ -2.13
PRIM1P49642 RNU6-1079P-201ENST00000362861 110 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 MIR618-201ENST00000385287 98 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 AC021146.9-201ENST00000512503 156 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 RNU5B-6P-201ENST00000516765 68 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 MIR7974-201ENST00000615835 79 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 MIR6515-201ENST00000619843 57 ntBASIC1.71□□□□□ -2.14
PRIM1P49642 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
PRIM1P49642 SCARNA17.3-201ENST00000516381 125 ntBASIC1.7□□□□□ -2.14
PRIM1P49642 MIR3938-201ENST00000582157 103 ntBASIC1.7□□□□□ -2.14
PRIM1P49642 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.7□□□□□ -2.14
PRIM1P49642 RNA5SP325-201ENST00000363756 130 ntBASIC1.69□□□□□ -2.14
PRIM1P49642 RNU1-124P-201ENST00000363861 145 ntBASIC1.69□□□□□ -2.14
PRIM1P49642 Y_RNA.236-201ENST00000364427 111 ntBASIC1.69□□□□□ -2.14
PRIM1P49642 SNORD26-201ENST00000384147 75 ntBASIC1.69□□□□□ -2.14
PRIM1P49642 MIR6767-201ENST00000637302 66 ntBASIC1.69□□□□□ -2.14
PRIM1P49642 SNORA25.8-201ENST00000364831 128 ntBASIC1.68□□□□□ -2.14
PRIM1P49642 SNORA63.6-201ENST00000364921 119 ntBASIC1.68□□□□□ -2.14
PRIM1P49642 MIR517B-201ENST00000385102 67 ntBASIC1.68□□□□□ -2.14
PRIM1P49642 AL157398.1-201ENST00000452981 186 ntBASIC1.68□□□□□ -2.14
PRIM1P49642 RNA5SP255-201ENST00000516370 107 ntBASIC1.68□□□□□ -2.14
PRIM1P49642 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.68□□□□□ -2.14
PRIM1P49642 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
PRIM1P49642 MIR548C-201ENST00000384815 97 ntBASIC1.67□□□□□ -2.14
PRIM1P49642 AC006210.1-201ENST00000424882 111 ntBASIC1.67□□□□□ -2.14
PRIM1P49642 PVT1_3.1-201ENST00000620853 95 ntBASIC1.67□□□□□ -2.14
PRIM1P49642 RNU6-698P-201ENST00000363523 107 ntBASIC1.66□□□□□ -2.14
PRIM1P49642 RNU6-34P-201ENST00000364874 107 ntBASIC1.66□□□□□ -2.14
PRIM1P49642 SNORD124-201ENST00000459577 104 ntBASIC1.66□□□□□ -2.14
PRIM1P49642 RPS29P23-201ENST00000458635 123 ntBASIC1.65□□□□□ -2.15
PRIM1P49642 Y_RNA.633-201ENST00000459107 95 ntBASIC1.65□□□□□ -2.15
PRIM1P49642 MIR548V-201ENST00000584165 80 ntBASIC1.65□□□□□ -2.15
PRIM1P49642 MIR6779-201ENST00000617283 64 ntBASIC1.65□□□□□ -2.15
PRIM1P49642 MIR18A-201ENST00000362310 71 ntBASIC1.64□□□□□ -2.15
PRIM1P49642 RNA5SP268-201ENST00000516828 124 ntBASIC1.64□□□□□ -2.15
PRIM1P49642 RNU6-808P-201ENST00000391233 108 ntBASIC1.63□□□□□ -2.15
PRIM1P49642 SNORD110-201ENST00000408189 75 ntBASIC1.63□□□□□ -2.15
PRIM1P49642 MIR548J-201ENST00000408833 112 ntBASIC1.62□□□□□ -2.15
PRIM1P49642 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.62□□□□□ -2.15
PRIM1P49642 SNORD2-201ENST00000459163 69 ntBASIC1.62□□□□□ -2.15
PRIM1P49642 AC068338.1-201ENST00000565567 176 ntBASIC1.62□□□□□ -2.15
PRIM1P49642 MIR6788-201ENST00000618842 66 ntBASIC1.62□□□□□ -2.15
PRIM1P49642 SNORD60.1-201ENST00000362451 73 ntBASIC1.61□□□□□ -2.15
PRIM1P49642 RNU6-1223P-201ENST00000517124 104 ntBASIC1.61□□□□□ -2.15
PRIM1P49642 RNA5SP404-201ENST00000517118 132 ntBASIC1.6□□□□□ -2.15
PRIM1P49642 AC011195.1-201ENST00000578177 177 ntBASIC1.6□□□□□ -2.15
PRIM1P49642 RNU7-174P-201ENST00000516248 59 ntBASIC1.59□□□□□ -2.15
PRIM1P49642 Y_RNA.722-201ENST00000517279 114 ntBASIC1.59□□□□□ -2.15
PRIM1P49642 MIR5706-201ENST00000579841 80 ntBASIC1.59□□□□□ -2.15
PRIM1P49642 MIR151B-201ENST00000584249 96 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 196.1 ms