Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNA5SP331-201ENST00000364986 107 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR934-201ENST00000401241 83 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-135P-201ENST00000516769 101 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6V-201ENST00000384105 107 ntBASIC1.8□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-808P-201ENST00000391233 108 ntBASIC1.8□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU1-78P-201ENST00000391248 165 ntBASIC1.79□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR4422-201ENST00000581938 83 ntBASIC1.79□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-910P-201ENST00000390844 107 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-122P-201ENST00000516818 107 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-92P-201ENST00000605893 104 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR6739-201ENST00000622461 75 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD42B-201ENST00000458893 67 ntBASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-1089P-201ENST00000516473 104 ntBASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 Y_RNA.250-201ENST00000364542 110 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR1827-201ENST00000408549 66 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD79.1-201ENST00000516069 84 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-656P-201ENST00000516785 107 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR3938-201ENST00000582157 103 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.75□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AL136317.1-201ENST00000612653 226 ntBASIC1.75□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-446P-201ENST00000362827 106 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD114-4-201ENST00000363962 75 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNA5SP117-201ENST00000365294 118 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MT-TY-201ENST00000387409 66 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNA5SP147-201ENST00000516493 109 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR4639-201ENST00000584938 69 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-1162P-201ENST00000384443 104 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD41.1-201ENST00000391000 69 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-469P-201ENST00000516253 101 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC018659.1-201ENST00000551083 169 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR4460-201ENST00000577862 86 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR7978-201ENST00000636158 59 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC010487.4-201ENST00000637027 61 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD114-23-201ENST00000363536 72 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR548L-201ENST00000408303 86 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC008834.1-201ENST00000511612 175 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR7974-201ENST00000615835 79 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-990P-201ENST00000364385 104 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD12-201ENST00000391002 90 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AC002350.1-201ENST00000490759 375 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-902P-201ENST00000517212 91 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR548V-201ENST00000584165 80 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AC244669.1-204ENST00000621564 178 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-936P-201ENST00000384005 107 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD28-201ENST00000384706 75 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RPS29P23-201ENST00000458635 123 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORA70.22-201ENST00000517160 124 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORA40.17-201ENST00000517256 115 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD60.1-201ENST00000362451 73 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR644A-201ENST00000385262 94 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR1197-201ENST00000408818 88 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-1184P-201ENST00000384588 108 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR548C-201ENST00000384815 97 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR521-2-201ENST00000384818 87 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU1-141P-201ENST00000364623 158 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD113-4-201ENST00000364802 75 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AL157398.1-201ENST00000452981 186 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-726P-201ENST00000364680 107 ntBASIC1.65□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORD113-2-201ENST00000391082 72 ntBASIC1.65□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA75.1-201ENST00000391130 148 ntBASIC1.64□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR330-201ENST00000362196 94 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR630-201ENST00000384957 97 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR758-201ENST00000390227 88 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 CYP3A137P-201ENST00000562436 69 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 AC211469.2-201ENST00000605461 205 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA15B-2-201ENST00000384058 135 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA15B-1-201ENST00000384334 135 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA8.2-201ENST00000384372 139 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR517B-201ENST00000385102 67 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNA5SP285-201ENST00000516619 119 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 uc_338.10-201ENST00000621872 182 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-698P-201ENST00000363523 107 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-34P-201ENST00000364874 107 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 snoU13.19-201ENST00000459148 104 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-1110P-201ENST00000516462 101 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNA5SP47-201ENST00000517230 109 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORD18A-201ENST00000363753 72 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-520P-201ENST00000384717 104 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR3660-201ENST00000584845 100 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 AC021146.9-201ENST00000512503 156 ntBASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU5B-6P-201ENST00000516765 68 ntBASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-30P-201ENST00000384561 107 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORD105-201ENST00000386910 85 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORD89-201ENST00000390981 114 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 200.3 ms