Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC104996.3-201ENST00000590718 94 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 Y_RNA.220-201ENST00000364244 109 ntBASIC0.39□□□□□ -2.35
PCDHA1Q9Y5I3 U3.27-201ENST00000391237 200 ntBASIC0.39□□□□□ -2.35
PCDHA1Q9Y5I3 U7.6-201ENST00000610841 64 ntBASIC0.39□□□□□ -2.35
PCDHA1Q9Y5I3 SNORA70.25-201ENST00000612741 95 ntBASIC0.39□□□□□ -2.35
PCDHA1Q9Y5I3 NAMPTP3-201ENST00000569273 224 ntBASIC0.38□□□□□ -2.35
PCDHA1Q9Y5I3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
PCDHA1Q9Y5I3 SNORD110-201ENST00000408189 75 ntBASIC0.37□□□□□ -2.35
PCDHA1Q9Y5I3 AC108740.1-201ENST00000498629 225 ntBASIC0.37□□□□□ -2.35
PCDHA1Q9Y5I3 AC069503.3-201ENST00000618674 145 ntBASIC0.37□□□□□ -2.35
PCDHA1Q9Y5I3 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.37□□□□□ -2.35
PCDHA1Q9Y5I3 RNA5SP62-201ENST00000363457 110 ntBASIC0.36□□□□□ -2.35
PCDHA1Q9Y5I3 Y_RNA.491-201ENST00000384417 107 ntBASIC0.36□□□□□ -2.35
PCDHA1Q9Y5I3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
PCDHA1Q9Y5I3 AC006210.1-201ENST00000424882 111 ntBASIC0.36□□□□□ -2.35
PCDHA1Q9Y5I3 MIR924-201ENST00000638017 53 ntBASIC0.36□□□□□ -2.35
PCDHA1Q9Y5I3 SNORD116-22-201ENST00000384430 92 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 MIR451A-201ENST00000385059 72 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 MT-TY-201ENST00000387409 66 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 MIR760-201ENST00000390220 80 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 MIR1236-201ENST00000408340 102 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 MIR4460-201ENST00000577862 86 ntBASIC0.35□□□□□ -2.35
PCDHA1Q9Y5I3 RNU4-32P-201ENST00000363404 141 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 RNA5SP325-201ENST00000363756 130 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 RNA5SP128-201ENST00000365305 116 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 RNA5SP292-201ENST00000390974 118 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 SNORA18.5-201ENST00000516616 101 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 MIR4668-201ENST00000582284 70 ntBASIC0.34□□□□□ -2.36
PCDHA1Q9Y5I3 SNORA9.1-201ENST00000362412 131 ntBASIC0.33□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-815P-201ENST00000384080 113 ntBASIC0.33□□□□□ -2.36
PCDHA1Q9Y5I3 AC073261.1-201ENST00000429409 121 ntBASIC0.33□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-1232P-201ENST00000516299 86 ntBASIC0.33□□□□□ -2.36
PCDHA1Q9Y5I3 MIR548O2-201ENST00000616090 70 ntBASIC0.33□□□□□ -2.36
PCDHA1Q9Y5I3 RNY1P7-201ENST00000384743 110 ntBASIC0.32□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-844P-201ENST00000517175 102 ntBASIC0.32□□□□□ -2.36
PCDHA1Q9Y5I3 MIR330-201ENST00000362196 94 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 SNORA63.2-201ENST00000362603 126 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-633P-201ENST00000362612 103 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 Y_RNA.620-201ENST00000411009 88 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 MIR548AD-201ENST00000584780 82 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 MIR8087-201ENST00000612745 78 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 MIR4315-1-201ENST00000636800 73 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 MIR4315-2-201ENST00000640925 73 ntBASIC0.31□□□□□ -2.36
PCDHA1Q9Y5I3 Y_RNA.125-201ENST00000363371 111 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-1131P-201ENST00000364955 107 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 RNY4P30-201ENST00000410216 95 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 HMGN2P22-201ENST00000427588 175 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 RNA5SP330-201ENST00000517096 96 ntBASIC0.3□□□□□ -2.36
PCDHA1Q9Y5I3 RNY4P3-201ENST00000365254 95 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-1051P-201ENST00000365471 102 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-49P-201ENST00000384256 107 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 MIR519C-201ENST00000385053 87 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 MIR501-201ENST00000390204 84 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 YWHAEP2-201ENST00000580066 112 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 MIR4514-201ENST00000581410 57 ntBASIC0.29□□□□□ -2.36
PCDHA1Q9Y5I3 RNU6-219P-201ENST00000364728 107 ntBASIC0.28□□□□□ -2.36
PCDHA1Q9Y5I3 MTATP6P29-201ENST00000415057 132 ntBASIC0.28□□□□□ -2.36
PCDHA1Q9Y5I3 FGF7P7-201ENST00000514120 227 ntBASIC0.27□□□□□ -2.37
PCDHA1Q9Y5I3 SNORA25.13-201ENST00000516395 103 ntBASIC0.27□□□□□ -2.37
PCDHA1Q9Y5I3 MIR4796-201ENST00000580742 81 ntBASIC0.27□□□□□ -2.37
PCDHA1Q9Y5I3 MIR4677-201ENST00000584153 80 ntBASIC0.27□□□□□ -2.37
PCDHA1Q9Y5I3 SNORD115-27-201ENST00000364430 82 ntBASIC0.26□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-497P-201ENST00000365316 104 ntBASIC0.26□□□□□ -2.37
PCDHA1Q9Y5I3 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-402P-201ENST00000410678 103 ntBASIC0.26□□□□□ -2.37
PCDHA1Q9Y5I3 MIR499B-201ENST00000636498 73 ntBASIC0.26□□□□□ -2.37
PCDHA1Q9Y5I3 SNORA24B-201ENST00000384176 131 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-675P-201ENST00000384236 104 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 Y_RNA.558-201ENST00000384685 113 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-127P-201ENST00000390897 107 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 MIR1197-201ENST00000408818 88 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-1052P-201ENST00000411398 104 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-719P-201ENST00000516671 104 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU5B-6P-201ENST00000516765 68 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-782P-201ENST00000516852 104 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 MIR3140-201ENST00000583685 90 ntBASIC0.25□□□□□ -2.37
PCDHA1Q9Y5I3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-652P-201ENST00000365488 107 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 Y_RNA.369-201ENST00000365568 117 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6V-201ENST00000384105 107 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 RNU7-129P-201ENST00000516128 62 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 RNU7-153P-201ENST00000516455 62 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 SNORA62.5-201ENST00000516634 120 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 uc_338.10-201ENST00000621872 182 ntBASIC0.24□□□□□ -2.37
PCDHA1Q9Y5I3 Y_RNA.407-201ENST00000383986 113 ntBASIC0.23□□□□□ -2.37
PCDHA1Q9Y5I3 SNORD90-201ENST00000391145 111 ntBASIC0.23□□□□□ -2.37
PCDHA1Q9Y5I3 MIR5582-201ENST00000579697 68 ntBASIC0.23□□□□□ -2.37
PCDHA1Q9Y5I3 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
PCDHA1Q9Y5I3 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
PCDHA1Q9Y5I3 Y_RNA.17-201ENST00000362433 111 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-1298P-201ENST00000362456 101 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 SNORA42.1-201ENST00000363515 137 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 RNA5SP457-201ENST00000363657 124 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 RNU6-1134P-201ENST00000365156 101 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
PCDHA1Q9Y5I3 SNORD115-37-201ENST00000363768 82 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms