Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 SNORA80D-201ENST00000384488 135 ntBASIC1.33□□□□□ -2.2
USP40Q9NVE5 RNU6-604P-201ENST00000390917 100 ntBASIC1.33□□□□□ -2.2
USP40Q9NVE5 RNA5SP480-201ENST00000516840 109 ntBASIC1.33□□□□□ -2.2
USP40Q9NVE5 MIR3920-201ENST00000581751 86 ntBASIC1.33□□□□□ -2.2
USP40Q9NVE5 RNU6-1126P-201ENST00000384002 107 ntBASIC1.32□□□□□ -2.2
USP40Q9NVE5 RNU6-977P-201ENST00000516411 103 ntBASIC1.32□□□□□ -2.2
USP40Q9NVE5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.32□□□□□ -2.2
USP40Q9NVE5 AL109933.3-201ENST00000619095 188 ntBASIC1.32□□□□□ -2.2
USP40Q9NVE5 MIR4773-1-201ENST00000637203 78 ntBASIC1.32□□□□□ -2.2
USP40Q9NVE5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
USP40Q9NVE5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
USP40Q9NVE5 SNORD45.1-201ENST00000363181 77 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 SNORD115-24-201ENST00000363528 82 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 RNU6-994P-201ENST00000410507 111 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 RNU7-90P-201ENST00000459216 62 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 RNU6-881P-201ENST00000516813 102 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 RNU6-1223P-201ENST00000517124 104 ntBASIC1.31□□□□□ -2.2
USP40Q9NVE5 RNU6-681P-201ENST00000364012 104 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 RNU6-471P-201ENST00000383944 106 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 MIR520F-201ENST00000384824 87 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 MIR9-2-201ENST00000384838 87 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 MIR100-201ENST00000385259 80 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 RNU1-119P-201ENST00000391122 165 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 MIR1827-201ENST00000408549 66 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 MIR6788-201ENST00000618842 66 ntBASIC1.3□□□□□ -2.2
USP40Q9NVE5 SNORD113.1-201ENST00000363280 73 ntBASIC1.29□□□□□ -2.2
USP40Q9NVE5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
USP40Q9NVE5 RNU6-630P-201ENST00000391258 106 ntBASIC1.29□□□□□ -2.2
USP40Q9NVE5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.29□□□□□ -2.2
USP40Q9NVE5 RNU7-13P-201ENST00000516413 62 ntBASIC1.29□□□□□ -2.2
USP40Q9NVE5 NAMPTP3-201ENST00000569273 224 ntBASIC1.29□□□□□ -2.2
USP40Q9NVE5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
USP40Q9NVE5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
USP40Q9NVE5 SNORD115-44-201ENST00000365391 82 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 Y_RNA.443-201ENST00000384135 111 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 MIR519E-201ENST00000385075 84 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 U3.27-201ENST00000391237 200 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 MIR548J-201ENST00000408833 112 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 MIR151B-201ENST00000584249 96 ntBASIC1.28□□□□□ -2.2
USP40Q9NVE5 RNU6-54P-201ENST00000365563 107 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 MIR644A-201ENST00000385262 94 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 AC244098.3-201ENST00000424803 96 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 AC002429.1-201ENST00000437672 148 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 RNU7-104P-201ENST00000459398 79 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 RNU6-982P-201ENST00000516216 102 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 SNORA40.17-201ENST00000517256 115 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 SNORD114-21-201ENST00000606412 72 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 AL136317.1-201ENST00000612653 226 ntBASIC1.27□□□□□ -2.21
USP40Q9NVE5 MIR1-1-201ENST00000362147 71 ntBASIC1.26□□□□□ -2.21
USP40Q9NVE5 RNU6-495P-201ENST00000362995 107 ntBASIC1.26□□□□□ -2.21
USP40Q9NVE5 SNORD114-26-201ENST00000363543 72 ntBASIC1.26□□□□□ -2.21
USP40Q9NVE5 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
USP40Q9NVE5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.25□□□□□ -2.21
USP40Q9NVE5 SNORD75.2-201ENST00000408784 58 ntBASIC1.25□□□□□ -2.21
USP40Q9NVE5 SNORD42B-201ENST00000458893 67 ntBASIC1.25□□□□□ -2.21
USP40Q9NVE5 RNU6-274P-201ENST00000459566 107 ntBASIC1.25□□□□□ -2.21
USP40Q9NVE5 MIR548O2-201ENST00000616090 70 ntBASIC1.25□□□□□ -2.21
USP40Q9NVE5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
USP40Q9NVE5 SNORA25.4-201ENST00000363666 124 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 RNU6-895P-201ENST00000384125 103 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 MIR598-201ENST00000384868 97 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 SNORD12-201ENST00000391002 90 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 AC002350.1-201ENST00000490759 375 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 RNU6-1057P-201ENST00000517162 102 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 MIR8053-201ENST00000613344 75 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 PVT1_3.1-201ENST00000620853 95 ntBASIC1.24□□□□□ -2.21
USP40Q9NVE5 RNU6-1216P-201ENST00000362590 107 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 Y_RNA.174-201ENST00000363781 105 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 MIR203A-201ENST00000384836 110 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 MIR617-201ENST00000385030 97 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 MIR1285-1-201ENST00000408593 84 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 RNU7-24P-201ENST00000458867 62 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 RNU6-752P-201ENST00000516376 102 ntBASIC1.23□□□□□ -2.21
USP40Q9NVE5 RNU6-1039P-201ENST00000383931 107 ntBASIC1.22□□□□□ -2.21
USP40Q9NVE5 AC093423.1-201ENST00000440817 142 ntBASIC1.22□□□□□ -2.21
USP40Q9NVE5 RNA5SP404-201ENST00000517118 132 ntBASIC1.22□□□□□ -2.21
USP40Q9NVE5 MIR373-201ENST00000362273 69 ntBASIC1.21□□□□□ -2.22
USP40Q9NVE5 RNU6-1335P-201ENST00000365426 107 ntBASIC1.21□□□□□ -2.22
USP40Q9NVE5 AL691482.2-201ENST00000457453 84 ntBASIC1.2□□□□□ -2.22
USP40Q9NVE5 SNORD124-201ENST00000459577 104 ntBASIC1.2□□□□□ -2.22
USP40Q9NVE5 AC244669.1-204ENST00000621564 178 ntBASIC1.2□□□□□ -2.22
USP40Q9NVE5 RNU4-38P-201ENST00000364472 129 ntBASIC1.19□□□□□ -2.22
USP40Q9NVE5 RNU6-1187P-201ENST00000364771 110 ntBASIC1.19□□□□□ -2.22
USP40Q9NVE5 SNORD28-201ENST00000384706 75 ntBASIC1.19□□□□□ -2.22
USP40Q9NVE5 SNORD41.1-201ENST00000391000 69 ntBASIC1.19□□□□□ -2.22
USP40Q9NVE5 AC067940.1-201ENST00000458411 300 ntBASIC1.19□□□□□ -2.22
USP40Q9NVE5 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
USP40Q9NVE5 SNORD18A-201ENST00000363753 72 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 RNU6-990P-201ENST00000364385 104 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 RNU6V-201ENST00000384105 107 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 SNORD89-201ENST00000390981 114 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 OR2A41P-201ENST00000473586 105 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 MIR4511-201ENST00000582784 87 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 MIR6509-201ENST00000614603 85 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 AC067863.3-201ENST00000624172 122 ntBASIC1.18□□□□□ -2.22
USP40Q9NVE5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP40Q9NVE5 MIR3973-201ENST00000579824 107 ntBASIC1.17□□□□□ -2.22
USP40Q9NVE5 MIR3657-201ENST00000584818 117 ntBASIC1.17□□□□□ -2.22
USP40Q9NVE5 MIR6779-201ENST00000617283 64 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms