Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR3064-201ENST00000581130 66 ntBASIC0.49□□□□□ -2.33
SMARCA1P28370 SNORA70.25-201ENST00000612741 95 ntBASIC0.49□□□□□ -2.33
SMARCA1P28370 Y_RNA.423-201ENST00000384057 113 ntBASIC0.48□□□□□ -2.33
SMARCA1P28370 AC093423.1-201ENST00000440817 142 ntBASIC0.48□□□□□ -2.33
SMARCA1P28370 RNA5SP484-201ENST00000458857 111 ntBASIC0.48□□□□□ -2.33
SMARCA1P28370 RNU7-74P-201ENST00000459104 62 ntBASIC0.48□□□□□ -2.33
SMARCA1P28370 Y_RNA.239-201ENST00000364444 113 ntBASIC0.47□□□□□ -2.33
SMARCA1P28370 RNU6-1131P-201ENST00000364955 107 ntBASIC0.47□□□□□ -2.33
SMARCA1P28370 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
SMARCA1P28370 RNU6-49P-201ENST00000384256 107 ntBASIC0.47□□□□□ -2.33
SMARCA1P28370 RNU1-141P-201ENST00000364623 158 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 RNU6-811P-201ENST00000384069 107 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 RNY4P30-201ENST00000410216 95 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 RNU6-935P-201ENST00000410371 100 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 RNU6-1232P-201ENST00000516299 86 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 MIR4514-201ENST00000581410 57 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 AC104996.3-201ENST00000590718 94 ntBASIC0.46□□□□□ -2.34
SMARCA1P28370 AC090625.1-201ENST00000357130 210 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 RNU6-509P-201ENST00000363519 107 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 Y_RNA.220-201ENST00000364244 109 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 RNA5SP292-201ENST00000390974 118 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
SMARCA1P28370 RNU6-863P-201ENST00000515989 104 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 RNA5SP285-201ENST00000516619 119 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 Y_RNA.694-201ENST00000516677 117 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 NAMPTP3-201ENST00000569273 224 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 MIR6086-201ENST00000638065 55 ntBASIC0.45□□□□□ -2.34
SMARCA1P28370 RNU4-32P-201ENST00000363404 141 ntBASIC0.44□□□□□ -2.34
SMARCA1P28370 VTRNA1-3-201ENST00000365645 89 ntBASIC0.44□□□□□ -2.34
SMARCA1P28370 MIR548U-201ENST00000390728 81 ntBASIC0.44□□□□□ -2.34
SMARCA1P28370 AC073869.9-201ENST00000641610 120 ntBASIC0.44□□□□□ -2.34
SMARCA1P28370 SNORA18.5-201ENST00000516616 101 ntBASIC0.43□□□□□ -2.34
SMARCA1P28370 MIR4668-201ENST00000582284 70 ntBASIC0.43□□□□□ -2.34
SMARCA1P28370 SNORA2A-201ENST00000383885 135 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 Y_RNA.491-201ENST00000384417 107 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 MIR451A-201ENST00000385059 72 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-848P-201ENST00000515948 107 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-617P-201ENST00000516147 107 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-473P-201ENST00000516164 107 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-1049P-201ENST00000516414 107 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-1057P-201ENST00000517162 102 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-844P-201ENST00000517175 102 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.42□□□□□ -2.34
SMARCA1P28370 RNU6-1298P-201ENST00000362456 101 ntBASIC0.41□□□□□ -2.34
SMARCA1P28370 SNORD115-27-201ENST00000364430 82 ntBASIC0.41□□□□□ -2.34
SMARCA1P28370 RNA5SP63-201ENST00000391225 112 ntBASIC0.41□□□□□ -2.34
SMARCA1P28370 RNU6-402P-201ENST00000410678 103 ntBASIC0.41□□□□□ -2.34
SMARCA1P28370 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
SMARCA1P28370 RNU6-815P-201ENST00000384080 113 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 SNORD116-22-201ENST00000384430 92 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 SNORD90-201ENST00000391145 111 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 SNORD110-201ENST00000408189 75 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 Y_RNA.620-201ENST00000411009 88 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 AC006210.1-201ENST00000424882 111 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 MIR5706-201ENST00000579841 80 ntBASIC0.4□□□□□ -2.35
SMARCA1P28370 RNU6-219P-201ENST00000364728 107 ntBASIC0.39□□□□□ -2.35
SMARCA1P28370 MIR760-201ENST00000390220 80 ntBASIC0.39□□□□□ -2.35
SMARCA1P28370 RNU7-153P-201ENST00000516455 62 ntBASIC0.39□□□□□ -2.35
SMARCA1P28370 RNU6-267P-201ENST00000516714 103 ntBASIC0.39□□□□□ -2.35
SMARCA1P28370 MIR4460-201ENST00000577862 86 ntBASIC0.39□□□□□ -2.35
SMARCA1P28370 RNU6-633P-201ENST00000362612 103 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 RNU6-1327P-201ENST00000365302 105 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 MIR1236-201ENST00000408340 102 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 RNU6-1052P-201ENST00000411398 104 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 MTATP6P29-201ENST00000415057 132 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 AC108740.1-201ENST00000498629 225 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 FGF7P7-201ENST00000514120 227 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 RNU6-719P-201ENST00000516671 104 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 MIR5582-201ENST00000579697 68 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 MIR3140-201ENST00000583685 90 ntBASIC0.38□□□□□ -2.35
SMARCA1P28370 MT-TY-201ENST00000387409 66 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 HMGN2P22-201ENST00000427588 175 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 AC073261.1-201ENST00000429409 121 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 MIR2909-201ENST00000617113 69 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 AC069503.3-201ENST00000618674 145 ntBASIC0.37□□□□□ -2.35
SMARCA1P28370 RNA5SP128-201ENST00000365305 116 ntBASIC0.36□□□□□ -2.35
SMARCA1P28370 RNU6-1051P-201ENST00000365471 102 ntBASIC0.36□□□□□ -2.35
SMARCA1P28370 U3.27-201ENST00000391237 200 ntBASIC0.36□□□□□ -2.35
SMARCA1P28370 YWHAEP2-201ENST00000580066 112 ntBASIC0.36□□□□□ -2.35
SMARCA1P28370 MIR548O2-201ENST00000616090 70 ntBASIC0.36□□□□□ -2.35
SMARCA1P28370 SNORA63.2-201ENST00000362603 126 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 MIR519C-201ENST00000385053 87 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 MIR1265-201ENST00000408444 86 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 RNU5B-6P-201ENST00000516765 68 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 RNA5SP170-201ENST00000517150 101 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 AC023932.2-201ENST00000603176 175 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 MIR499B-201ENST00000636498 73 ntBASIC0.35□□□□□ -2.35
SMARCA1P28370 Y_RNA.17-201ENST00000362433 111 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 RNU6-497P-201ENST00000365316 104 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 Y_RNA.558-201ENST00000384685 113 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 MIR216B-201ENST00000390186 82 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 MIR501-201ENST00000390204 84 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 MIR4796-201ENST00000580742 81 ntBASIC0.34□□□□□ -2.36
SMARCA1P28370 RNU6-1134P-201ENST00000365156 101 ntBASIC0.33□□□□□ -2.36
SMARCA1P28370 Y_RNA.369-201ENST00000365568 117 ntBASIC0.33□□□□□ -2.36
SMARCA1P28370 Y_RNA.593-201ENST00000410292 98 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 511.5 ms