Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-980P-201ENST00000516925 103 ntBASIC2.17□□□□□ -2.06
COL9A1P20849 AC018659.1-201ENST00000551083 169 ntBASIC2.17□□□□□ -2.06
COL9A1P20849 AL049779.4-201ENST00000604500 156 ntBASIC2.17□□□□□ -2.06
COL9A1P20849 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL9A1P20849 RNU6-1162P-201ENST00000384443 104 ntBASIC2.16□□□□□ -2.06
COL9A1P20849 SNORD41.1-201ENST00000391000 69 ntBASIC2.16□□□□□ -2.06
COL9A1P20849 RNU6ATAC14P-201ENST00000516218 91 ntBASIC2.16□□□□□ -2.06
COL9A1P20849 MIR6132-201ENST00000622083 109 ntBASIC2.16□□□□□ -2.06
COL9A1P20849 AC010297.1-201ENST00000623948 149 ntBASIC2.16□□□□□ -2.06
COL9A1P20849 SNORD60.1-201ENST00000362451 73 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 SNORA67.5-201ENST00000391036 107 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 MIR1827-201ENST00000408549 66 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 MIR4422-201ENST00000581938 83 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 MIR548AD-201ENST00000584780 82 ntBASIC2.15□□□□□ -2.07
COL9A1P20849 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.15□□□□□ -2.07
COL9A1P20849 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL9A1P20849 DEFA7P-201ENST00000382676 285 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
COL9A1P20849 SNORD79.1-201ENST00000516069 84 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 RNA5SP147-201ENST00000516493 109 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 SNORA40.17-201ENST00000517256 115 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 MIR4460-201ENST00000577862 86 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 MIR4639-201ENST00000584938 69 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 MIR6840-201ENST00000611937 71 ntBASIC2.14□□□□□ -2.07
COL9A1P20849 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
COL9A1P20849 RNU6-910P-201ENST00000390844 107 ntBASIC2.13□□□□□ -2.07
COL9A1P20849 AL136317.1-201ENST00000612653 226 ntBASIC2.13□□□□□ -2.07
COL9A1P20849 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL9A1P20849 RNU6-990P-201ENST00000364385 104 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 AL356379.1-201ENST00000414105 126 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 AC025033.1-201ENST00000463883 194 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 MIR548V-201ENST00000584165 80 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 AL096840.1-201ENST00000603287 93 ntBASIC2.12□□□□□ -2.07
COL9A1P20849 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
COL9A1P20849 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
COL9A1P20849 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
COL9A1P20849 RNU6-520P-201ENST00000384717 104 ntBASIC2.11□□□□□ -2.07
COL9A1P20849 MIR521-2-201ENST00000384818 87 ntBASIC2.11□□□□□ -2.07
COL9A1P20849 RNU4ATAC4P-201ENST00000516307 126 ntBASIC2.11□□□□□ -2.07
COL9A1P20849 Y_RNA.783-201ENST00000613546 102 ntBASIC2.11□□□□□ -2.07
COL9A1P20849 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
COL9A1P20849 AC002350.1-201ENST00000490759 375 ntBASIC2.1□□□□□ -2.07
COL9A1P20849 RNU6-469P-201ENST00000516253 101 ntBASIC2.1□□□□□ -2.07
COL9A1P20849 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL9A1P20849 SNORA7.1-201ENST00000363750 139 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 SNORD12-201ENST00000391002 90 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 SNORA48.3-201ENST00000391081 134 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 SNORD113-2-201ENST00000391082 72 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 RNU6-1250P-201ENST00000391218 107 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC2.09□□□□□ -2.07
COL9A1P20849 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.09□□□□□ -2.08
COL9A1P20849 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
COL9A1P20849 MIR6073-201ENST00000352083 89 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 SNORD28-201ENST00000384706 75 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 MIR545-201ENST00000385085 106 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 RNU6-724P-201ENST00000390958 105 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 SNORA75.1-201ENST00000391130 148 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 MIR548L-201ENST00000408303 86 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 AL157398.1-201ENST00000452981 186 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 AC008834.1-201ENST00000511612 175 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 AC244669.1-204ENST00000621564 178 ntBASIC2.08□□□□□ -2.08
COL9A1P20849 RNU4-33P-201ENST00000364316 85 ntBASIC2.07□□□□□ -2.08
COL9A1P20849 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.07□□□□□ -2.08
COL9A1P20849 RNU6-1223P-201ENST00000517124 104 ntBASIC2.07□□□□□ -2.08
COL9A1P20849 RNU6-902P-201ENST00000517212 91 ntBASIC2.07□□□□□ -2.08
COL9A1P20849 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.07□□□□□ -2.08
COL9A1P20849 RNU1-141P-201ENST00000364623 158 ntBASIC2.06□□□□□ -2.08
COL9A1P20849 MIR548C-201ENST00000384815 97 ntBASIC2.06□□□□□ -2.08
COL9A1P20849 RNA5SP181-201ENST00000410246 98 ntBASIC2.06□□□□□ -2.08
COL9A1P20849 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.06□□□□□ -2.08
COL9A1P20849 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
COL9A1P20849 RNU6-698P-201ENST00000363523 107 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 RNU6-34P-201ENST00000364874 107 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 MIR630-201ENST00000384957 97 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 MIR517B-201ENST00000385102 67 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 MIR644A-201ENST00000385262 94 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 MIR8081-201ENST00000611533 95 ntBASIC2.05□□□□□ -2.08
COL9A1P20849 SNORA15B-2-201ENST00000384058 135 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 SNORA15B-1-201ENST00000384334 135 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC2.04□□□□□ -2.08
COL9A1P20849 RNA5SP402-201ENST00000517148 110 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 SNORA70.22-201ENST00000517160 124 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
COL9A1P20849 MIR5002-201ENST00000584713 97 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 AL137847.3-201ENST00000611521 109 ntBASIC2.04□□□□□ -2.08
COL9A1P20849 RNU6-726P-201ENST00000364680 107 ntBASIC2.03□□□□□ -2.08
COL9A1P20849 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
COL9A1P20849 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.02□□□□□ -2.09
COL9A1P20849 AC084768.2-201ENST00000622736 221 ntBASIC2.02□□□□□ -2.09
COL9A1P20849 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL9A1P20849 SNORA8.2-201ENST00000384372 139 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 HMGN2P19-201ENST00000425149 265 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 RNU7-174P-201ENST00000516248 59 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 RNU1-40P-201ENST00000516816 164 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 RNU1-97P-201ENST00000516872 164 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 RN7SL793P-201ENST00000583259 296 ntBASIC2.01□□□□□ -2.09
COL9A1P20849 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 214.3 ms