Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR577-201ENST00000385196 96 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 SNORA13-201ENST00000458790 133 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 RNU6-772P-201ENST00000516042 105 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 RNU6-762P-201ENST00000517107 102 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 MIR3681-201ENST00000580089 72 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 MIR6851-201ENST00000617060 67 ntBASIC-1.2□□□□□ -2.6
HMGB1P09429 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.21□□□□□ -2.6
HMGB1P09429 RNU6-65P-201ENST00000516332 98 ntBASIC-1.21□□□□□ -2.6
HMGB1P09429 SNORD38.3-201ENST00000516599 73 ntBASIC-1.21□□□□□ -2.6
HMGB1P09429 RNU6-86P-201ENST00000606534 107 ntBASIC-1.21□□□□□ -2.6
HMGB1P09429 AC025521.1-201ENST00000621624 286 ntBASIC-1.21□□□□□ -2.6
HMGB1P09429 RNU4-36P-201ENST00000364294 144 ntBASIC-1.22□□□□□ -2.6
HMGB1P09429 SNORA40-201ENST00000388090 126 ntBASIC-1.22□□□□□ -2.6
HMGB1P09429 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.22□□□□□ -2.6
HMGB1P09429 AL157777.2-201ENST00000258070 137 ntBASIC-1.23□□□□□ -2.61
HMGB1P09429 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.23□□□□□ -2.61
HMGB1P09429 MIR196A1-201ENST00000388006 70 ntBASIC-1.23□□□□□ -2.61
HMGB1P09429 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.23□□□□□ -2.61
HMGB1P09429 MIR4694-201ENST00000578534 80 ntBASIC-1.23□□□□□ -2.61
HMGB1P09429 RNU6-502P-201ENST00000362419 108 ntBASIC-1.24□□□□□ -2.61
HMGB1P09429 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.24□□□□□ -2.61
HMGB1P09429 MIR4536-1-201ENST00000583537 88 ntBASIC-1.24□□□□□ -2.61
HMGB1P09429 SCARNA17-201ENST00000516183 144 ntBASIC-1.25□□□□□ -2.61
HMGB1P09429 SNORD83B-201ENST00000386745 93 ntBASIC-1.26□□□□□ -2.61
HMGB1P09429 snoU13.13-201ENST00000458842 104 ntBASIC-1.26□□□□□ -2.61
HMGB1P09429 AL035470.1-201ENST00000622571 220 ntBASIC-1.26□□□□□ -2.61
HMGB1P09429 RNU6-832P-201ENST00000363319 107 ntBASIC-1.27□□□□□ -2.61
HMGB1P09429 RNU6-54P-201ENST00000365563 107 ntBASIC-1.27□□□□□ -2.61
HMGB1P09429 MIR1265-201ENST00000408444 86 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 RNU6-721P-201ENST00000410155 105 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 MIR3179-1-201ENST00000578940 84 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 MIR3179-2-201ENST00000579107 84 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 MIR3179-3-201ENST00000579566 84 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 MIR3179-4-201ENST00000617599 84 ntBASIC-1.28□□□□□ -2.61
HMGB1P09429 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 MIR518B-201ENST00000385127 83 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 RNU7-55P-201ENST00000459426 62 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 MIR548AX-201ENST00000580117 73 ntBASIC-1.29□□□□□ -2.62
HMGB1P09429 RNU6-75P-201ENST00000515944 104 ntBASIC-1.3□□□□□ -2.62
HMGB1P09429 RNU7-200P-201ENST00000516105 62 ntBASIC-1.3□□□□□ -2.62
HMGB1P09429 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 SNORD115-25-201ENST00000362619 82 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 RNY3P2-201ENST00000362918 102 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 SNORD114-25-201ENST00000363742 72 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 RNU6-719P-201ENST00000516671 104 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 MIR4679-2-201ENST00000578358 77 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.31□□□□□ -2.62
HMGB1P09429 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.31□□□□□ -2.62
HMGB1P09429 SNORD114-4-201ENST00000363962 75 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 U3.27-201ENST00000391237 200 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 RNU6-257P-201ENST00000410238 98 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 RNA5SP25-201ENST00000410815 110 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 FGF7P7-201ENST00000514120 227 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 SNORA40.17-201ENST00000517256 115 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 AC068339.1-201ENST00000526965 141 ntBASIC-1.32□□□□□ -2.62
HMGB1P09429 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.33□□□□□ -2.62
HMGB1P09429 RNU7-107P-201ENST00000459121 61 ntBASIC-1.33□□□□□ -2.62
HMGB1P09429 Y_RNA.568-201ENST00000384742 113 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.34□□□□□ -2.62
HMGB1P09429 SNORD2-201ENST00000459163 69 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.34□□□□□ -2.62
HMGB1P09429 SNORD22.1-201ENST00000516331 125 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 AL513043.2-201ENST00000573941 143 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 AC145423.2-201ENST00000610631 239 ntBASIC-1.34□□□□□ -2.62
HMGB1P09429 SNORD50.2-201ENST00000365465 70 ntBASIC-1.35□□□□□ -2.63
HMGB1P09429 SNORA49-201ENST00000386157 136 ntBASIC-1.35□□□□□ -2.63
HMGB1P09429 AC090425.1-201ENST00000610007 140 ntBASIC-1.35□□□□□ -2.63
HMGB1P09429 Y_RNA.68-201ENST00000362881 102 ntBASIC-1.36□□□□□ -2.63
HMGB1P09429 RNU6-35P-201ENST00000384530 107 ntBASIC-1.36□□□□□ -2.63
HMGB1P09429 AC022137.1-201ENST00000483735 151 ntBASIC-1.36□□□□□ -2.63
HMGB1P09429 RNU6-973P-201ENST00000364690 107 ntBASIC-1.37□□□□□ -2.63
HMGB1P09429 MIR517B-201ENST00000385102 67 ntBASIC-1.37□□□□□ -2.63
HMGB1P09429 SNORD45B-201ENST00000364617 72 ntBASIC-1.38□□□□□ -2.63
HMGB1P09429 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.38□□□□□ -2.63
HMGB1P09429 MIR548A1-201ENST00000385041 97 ntBASIC-1.39□□□□□ -2.63
HMGB1P09429 AP000533.3-201ENST00000447704 118 ntBASIC-1.39□□□□□ -2.63
HMGB1P09429 RNU6-971P-201ENST00000516920 106 ntBASIC-1.39□□□□□ -2.63
HMGB1P09429 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 RNU6-346P-201ENST00000516288 111 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 MIR3613-201ENST00000579844 87 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 MIR5704-201ENST00000584029 77 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 uc_338.19-201ENST00000616808 99 ntBASIC-1.4□□□□□ -2.63
HMGB1P09429 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 SNORD114-15-201ENST00000364687 72 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 MIR582-201ENST00000365731 98 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 snosnR66.1-201ENST00000391095 99 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 AL500527.2-201ENST00000454105 95 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 RNU7-85P-201ENST00000458851 63 ntBASIC-1.41□□□□□ -2.64
HMGB1P09429 MIR4439-201ENST00000583746 80 ntBASIC-1.41□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 188.2 ms