Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 RNU2-72P-201ENST00000411175 163 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 SEPT14P3-201ENST00000439401 183 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 AL732372.2-207ENST00000445840 183 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 SEPT14P2-201ENST00000453405 183 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 FO082796.1-201ENST00000523795 183 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 AC005520.4-201ENST00000604337 90 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 RNU6-1085P-201ENST00000363576 107 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 RNU6-598P-201ENST00000364017 105 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.599-201ENST00000410489 109 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 AL121914.1-201ENST00000450188 156 ntBASIC-3.92□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 MIR548C-201ENST00000384815 97 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 RNU6-519P-201ENST00000410590 108 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 MTND3P2-201ENST00000438452 342 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 RNY4P20-201ENST00000516678 93 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 RNU6-807P-201ENST00000516805 107 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 AC093424.1-201ENST00000604999 338 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 AC092794.1-201ENST00000612734 582 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 U2.7-201ENST00000619197 100 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 AC138305.3-201ENST00000624988 240 ntBASIC-3.93□□□□□ -3.04
CCDC88BA6NC98 SNORD113-8-201ENST00000363497 74 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 RNU6-1090P-201ENST00000364065 94 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 SNORD113-3-201ENST00000364830 72 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 RNU6-211P-201ENST00000384047 107 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 MIR548A3-201ENST00000385297 97 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 SNORD90-201ENST00000391145 111 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 MTND2P14-201ENST00000482139 351 ntBASIC-3.94□□□□□ -3.04
CCDC88BA6NC98 MIR429-201ENST00000362106 83 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.109-201ENST00000363215 102 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.629-201ENST00000411368 105 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 AC104996.3-201ENST00000590718 94 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 Z69908.1-201ENST00000622603 247 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 AF246928.1-201ENST00000623768 87 ntBASIC-3.95□□□□□ -3.04
CCDC88BA6NC98 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.96□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.74-201ENST00000362911 99 ntBASIC-3.96□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.602-201ENST00000410535 92 ntBASIC-3.96□□□□□ -3.04
CCDC88BA6NC98 Y_RNA.639-201ENST00000458981 102 ntBASIC-3.96□□□□□ -3.04
CCDC88BA6NC98 RNU6-151P-201ENST00000364158 107 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 AL118496.2-201ENST00000448300 230 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 U8.20-201ENST00000459445 131 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 MIR3646-201ENST00000578301 84 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 MIR548Z-201ENST00000584743 97 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 DLEU2_1.2-201ENST00000614667 120 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 DLEU2_2.2-201ENST00000615474 90 ntBASIC-3.97□□□□□ -3.04
CCDC88BA6NC98 RNU6-1215P-201ENST00000384441 102 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 RNU6-1018P-201ENST00000516577 106 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 Y_RNA.713-201ENST00000517013 96 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 DLEU2_3.2-201ENST00000612883 73 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 U2.18-201ENST00000622185 84 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 Y_RNA.64-201ENST00000362845 102 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 MIR513B-201ENST00000385136 84 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 MIR759-201ENST00000390224 91 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 RPS29P30-201ENST00000600975 111 ntBASIC-3.98□□□□□ -3.05
CCDC88BA6NC98 SNORA27.2-201ENST00000363365 126 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNY1P1-201ENST00000364372 112 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNU6-828P-201ENST00000364876 107 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNY4P10-201ENST00000365571 96 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNU6-995P-201ENST00000391244 107 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNU6-971P-201ENST00000516920 106 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 NBR2-204ENST00000587322 63 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 AL442128.1-201ENST00000615151 90 ntBASIC-3.99□□□□□ -3.05
CCDC88BA6NC98 RNU6-656P-201ENST00000516785 107 ntBASIC-4□□□□□ -3.05
CCDC88BA6NC98 RNU6-1271P-201ENST00000517049 105 ntBASIC-4□□□□□ -3.05
CCDC88BA6NC98 AL731768.1-201ENST00000603124 139 ntBASIC-4□□□□□ -3.05
CCDC88BA6NC98 RNU6-1324P-201ENST00000384222 107 ntBASIC-4.01□□□□□ -3.05
CCDC88BA6NC98 RNA5SP106-201ENST00000517274 100 ntBASIC-4.01□□□□□ -3.05
CCDC88BA6NC98 AL162413.1-201ENST00000603198 110 ntBASIC-4.01□□□□□ -3.05
CCDC88BA6NC98 Y_RNA.282-201ENST00000364793 102 ntBASIC-4.02□□□□□ -3.05
CCDC88BA6NC98 MIR548I1-201ENST00000408810 149 ntBASIC-4.02□□□□□ -3.05
CCDC88BA6NC98 SNORA18.5-201ENST00000516616 101 ntBASIC-4.02□□□□□ -3.05
CCDC88BA6NC98 AL137067.1-201ENST00000615933 120 ntBASIC-4.02□□□□□ -3.05
CCDC88BA6NC98 RNU4-90P-201ENST00000362773 141 ntBASIC-4.03□□□□□ -3.05
CCDC88BA6NC98 MIR548AA1-201ENST00000384971 97 ntBASIC-4.03□□□□□ -3.05
CCDC88BA6NC98 RNA5SP292-201ENST00000390974 118 ntBASIC-4.03□□□□□ -3.05
CCDC88BA6NC98 RNU7-125P-201ENST00000458760 62 ntBASIC-4.03□□□□□ -3.05
CCDC88BA6NC98 MT-TI-201ENST00000387365 69 ntBASIC-4.04□□□□□ -3.06
CCDC88BA6NC98 AL513043.2-201ENST00000573941 143 ntBASIC-4.04□□□□□ -3.06
CCDC88BA6NC98 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-4.04□□□□□ -3.06
CCDC88BA6NC98 RNU6-363P-201ENST00000362895 105 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.163-201ENST00000363702 113 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 MIR3163-201ENST00000581592 73 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 SNORA25.1-201ENST00000362326 128 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 RNU6-834P-201ENST00000362367 110 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.155-201ENST00000363632 101 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 RNU6-409P-201ENST00000384114 104 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 RNU6-1314P-201ENST00000517139 104 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 MIR3915-201ENST00000578518 97 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 MIR6863-201ENST00000636112 90 ntBASIC-4.05□□□□□ -3.06
CCDC88BA6NC98 RNU6-483P-201ENST00000384088 108 ntBASIC-4.06□□□□□ -3.06
CCDC88BA6NC98 MT-TW-201ENST00000387382 68 ntBASIC-4.06□□□□□ -3.06
CCDC88BA6NC98 MIR548F5-201ENST00000408421 86 ntBASIC-4.06□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.657-201ENST00000515983 102 ntBASIC-4.06□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.693-201ENST00000516641 110 ntBASIC-4.06□□□□□ -3.06
CCDC88BA6NC98 RNU6-238P-201ENST00000363313 106 ntBASIC-4.07□□□□□ -3.06
Retrieved 100 of 98,524 protein–RNA pairs in 199.7 ms