Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 MIR599-201ENST00000385069 95 ntBASIC0.9□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-243P-201ENST00000391140 107 ntBASIC0.9□□□□□ -2.27
NR2E3Q9Y5X4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.9□□□□□ -2.27
NR2E3Q9Y5X4 MIR6086-201ENST00000638065 55 ntBASIC0.9□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.283-201ENST00000364798 112 ntBASIC0.89□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-524P-201ENST00000384270 107 ntBASIC0.89□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.609-201ENST00000410669 89 ntBASIC0.89□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-267P-201ENST00000516714 103 ntBASIC0.89□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-762P-201ENST00000517107 102 ntBASIC0.89□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.17-201ENST00000362433 111 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNA5SP403-201ENST00000363598 108 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNA5SP117-201ENST00000365294 118 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-675P-201ENST00000384236 104 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-110P-201ENST00000384508 104 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-402P-201ENST00000410678 103 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.620-201ENST00000411009 88 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 RNU7-161P-201ENST00000517289 62 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 MIR6866-201ENST00000638146 69 ntBASIC0.88□□□□□ -2.27
NR2E3Q9Y5X4 MIR18A-201ENST00000362310 71 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 SNORD18A-201ENST00000363753 72 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 PSMC1P5-201ENST00000512850 177 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 MIR3678-201ENST00000578455 94 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 MIR4668-201ENST00000582284 70 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 MTRNR2L2-201ENST00000604882 87 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 TRDV1-202ENST00000621643 102 ntBASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.87□□□□□ -2.27
NR2E3Q9Y5X4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 SNORD115-27-201ENST00000364430 82 ntBASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 AC098934.3-201ENST00000430450 190 ntBASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 U6.100-201ENST00000636230 99 ntBASIC0.86□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.221-201ENST00000364248 96 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 SNORD73B-201ENST00000364394 72 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 Y_RNA.558-201ENST00000384685 113 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 SNORD28-201ENST00000384706 75 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 RNA5SP222-201ENST00000411039 105 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 AC006254.2-201ENST00000603259 279 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 AC243829.3-201ENST00000622177 108 ntBASIC0.85□□□□□ -2.27
NR2E3Q9Y5X4 SNORD115-24-201ENST00000363528 82 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-1134P-201ENST00000365156 101 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-132P-201ENST00000383863 107 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNY1P8-201ENST00000383970 114 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 SNORD116-22-201ENST00000384430 92 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-519P-201ENST00000410590 108 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNA5SP47-201ENST00000517230 109 ntBASIC0.84□□□□□ -2.27
NR2E3Q9Y5X4 RNU6-633P-201ENST00000362612 103 ntBASIC0.83□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-135P-201ENST00000516769 101 ntBASIC0.83□□□□□ -2.28
NR2E3Q9Y5X4 MIR4639-201ENST00000584938 69 ntBASIC0.83□□□□□ -2.28
NR2E3Q9Y5X4 MIR4653-201ENST00000585107 83 ntBASIC0.83□□□□□ -2.28
NR2E3Q9Y5X4 AC062037.1-201ENST00000605302 128 ntBASIC0.83□□□□□ -2.28
NR2E3Q9Y5X4 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-466P-201ENST00000391224 103 ntBASIC0.82□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-469P-201ENST00000516253 101 ntBASIC0.82□□□□□ -2.28
NR2E3Q9Y5X4 AC244669.1-204ENST00000621564 178 ntBASIC0.82□□□□□ -2.28
NR2E3Q9Y5X4 MIR5087-201ENST00000635826 76 ntBASIC0.82□□□□□ -2.28
NR2E3Q9Y5X4 SNORA36.1-201ENST00000363424 132 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 MIR548AG2-201ENST00000581228 64 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 MIR3920-201ENST00000581751 86 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 MIR4536-1-201ENST00000583537 88 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 MIR6828-201ENST00000636181 60 ntBASIC0.81□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-509P-201ENST00000363519 107 ntBASIC0.8□□□□□ -2.28
NR2E3Q9Y5X4 RNA5SP292-201ENST00000390974 118 ntBASIC0.8□□□□□ -2.28
NR2E3Q9Y5X4 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.8□□□□□ -2.28
NR2E3Q9Y5X4 MIR3064-201ENST00000581130 66 ntBASIC0.8□□□□□ -2.28
NR2E3Q9Y5X4 MIR4696-201ENST00000581431 70 ntBASIC0.8□□□□□ -2.28
NR2E3Q9Y5X4 MIRLET7F1-201ENST00000362202 87 ntBASIC0.79□□□□□ -2.28
NR2E3Q9Y5X4 Y_RNA.73-201ENST00000362910 113 ntBASIC0.79□□□□□ -2.28
NR2E3Q9Y5X4 Y_RNA.388-201ENST00000383919 113 ntBASIC0.79□□□□□ -2.28
NR2E3Q9Y5X4 MIR450A2-201ENST00000385022 100 ntBASIC0.79□□□□□ -2.28
NR2E3Q9Y5X4 RNA5SP285-201ENST00000516619 119 ntBASIC0.79□□□□□ -2.28
NR2E3Q9Y5X4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 SNORA36.2-201ENST00000384004 127 ntBASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 RNU6-65P-201ENST00000516332 98 ntBASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 RNU7-153P-201ENST00000516455 62 ntBASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 RNA5SP94-201ENST00000516917 108 ntBASIC0.78□□□□□ -2.28
NR2E3Q9Y5X4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.78□□□□□ -2.29
NR2E3Q9Y5X4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.29
NR2E3Q9Y5X4 MIR494-201ENST00000349529 81 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-664P-201ENST00000362381 107 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-726P-201ENST00000364680 107 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 MIR140-201ENST00000385282 100 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 SNORD41.1-201ENST00000391000 69 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 Y_RNA.596-201ENST00000410462 109 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 RNY4P29-201ENST00000410801 97 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 RNU7-104P-201ENST00000459398 79 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 AC104996.3-201ENST00000590718 94 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 MIR2909-201ENST00000617113 69 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 MIR548BB-201ENST00000626714 66 ntBASIC0.77□□□□□ -2.29
NR2E3Q9Y5X4 RNU4-32P-201ENST00000363404 141 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 Y_RNA.207-201ENST00000364142 106 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-979P-201ENST00000383896 107 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-811P-201ENST00000384069 107 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 218.6 ms