Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 7SK.8-201ENST00000612110 250 ntBASIC2.13□□□□□ -2.07
PCDHB3Q9Y5E6 7SK.11-201ENST00000615477 250 ntBASIC2.13□□□□□ -2.07
PCDHB3Q9Y5E6 7SK.13-201ENST00000622040 250 ntBASIC2.13□□□□□ -2.07
PCDHB3Q9Y5E6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PCDHB3Q9Y5E6 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 MIR221-201ENST00000385135 110 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 MIR100-201ENST00000385259 80 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 MIR676-201ENST00000390702 67 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 HMGN2P38-201ENST00000423806 265 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 RNA5SP200-201ENST00000516360 103 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-122P-201ENST00000516818 107 ntBASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
PCDHB3Q9Y5E6 SUMO2P12-201ENST00000405924 140 ntBASIC2.11□□□□□ -2.07
PCDHB3Q9Y5E6 MIR3938-201ENST00000582157 103 ntBASIC2.11□□□□□ -2.07
PCDHB3Q9Y5E6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PCDHB3Q9Y5E6 SNORD113-4-201ENST00000364802 75 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-936P-201ENST00000384005 107 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 RNU4-52P-201ENST00000384209 138 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-808P-201ENST00000391233 108 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-1089P-201ENST00000516473 104 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 RNA5SP147-201ENST00000516493 109 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 AC067863.3-201ENST00000624172 122 ntBASIC2.1□□□□□ -2.07
PCDHB3Q9Y5E6 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-990P-201ENST00000364385 104 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 MIR520F-201ENST00000384824 87 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 SNORA48.3-201ENST00000391081 134 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-548P-201ENST00000517083 115 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 MIR5002-201ENST00000584713 97 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 RNU6-92P-201ENST00000605893 104 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 MIR6739-201ENST00000622461 75 ntBASIC2.09□□□□□ -2.07
PCDHB3Q9Y5E6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 MIR1-1-201ENST00000362147 71 ntBASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 SNORA80D-201ENST00000384488 135 ntBASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 RNU6-717P-201ENST00000459076 104 ntBASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 AL353997.5-201ENST00000618886 171 ntBASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 ZNF355P-201ENST00000427301 3216 ntBASIC2.08□□□□□ -2.08
PCDHB3Q9Y5E6 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 SNORA64-201ENST00000384674 134 ntBASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 SNORA75.1-201ENST00000391130 148 ntBASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 RNA5SP338-201ENST00000410495 85 ntBASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 RNU7-90P-201ENST00000459216 62 ntBASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 AL136317.1-201ENST00000612653 226 ntBASIC2.07□□□□□ -2.08
PCDHB3Q9Y5E6 RNU6-302P-201ENST00000365249 107 ntBASIC2.06□□□□□ -2.08
PCDHB3Q9Y5E6 AC025033.1-201ENST00000463883 194 ntBASIC2.06□□□□□ -2.08
PCDHB3Q9Y5E6 RNU1-40P-201ENST00000516816 164 ntBASIC2.06□□□□□ -2.08
PCDHB3Q9Y5E6 RNU1-97P-201ENST00000516872 164 ntBASIC2.06□□□□□ -2.08
PCDHB3Q9Y5E6 MIR764-201ENST00000390811 85 ntBASIC2.05□□□□□ -2.08
PCDHB3Q9Y5E6 RNU6-910P-201ENST00000390844 107 ntBASIC2.05□□□□□ -2.08
PCDHB3Q9Y5E6 MIR3198-2-201ENST00000577868 80 ntBASIC2.05□□□□□ -2.08
PCDHB3Q9Y5E6 MIR548V-201ENST00000584165 80 ntBASIC2.05□□□□□ -2.08
PCDHB3Q9Y5E6 RNU6-1184P-201ENST00000384588 108 ntBASIC2.04□□□□□ -2.08
PCDHB3Q9Y5E6 RNA5SP489-201ENST00000410986 109 ntBASIC2.04□□□□□ -2.08
PCDHB3Q9Y5E6 RNU7-74P-201ENST00000459104 62 ntBASIC2.04□□□□□ -2.08
PCDHB3Q9Y5E6 SNORD60.1-201ENST00000362451 73 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 MT-TY-201ENST00000387409 66 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 SNORD79.1-201ENST00000516069 84 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 MIR4448-201ENST00000584360 86 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 RMST_2.1-201ENST00000617263 136 ntBASIC2.03□□□□□ -2.08
PCDHB3Q9Y5E6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.09
PCDHB3Q9Y5E6 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PCDHB3Q9Y5E6 RNA5SP160-201ENST00000364866 120 ntBASIC2.02□□□□□ -2.09
PCDHB3Q9Y5E6 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.02□□□□□ -2.09
PCDHB3Q9Y5E6 MIR1827-201ENST00000408549 66 ntBASIC2.02□□□□□ -2.09
PCDHB3Q9Y5E6 RNA5SP99-201ENST00000364020 114 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 RNA5SP117-201ENST00000365294 118 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 MIR644A-201ENST00000385262 94 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 SNORD41.1-201ENST00000391000 69 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 RNA5SP458-201ENST00000516188 119 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 RNU6-295P-201ENST00000516901 104 ntBASIC2.01□□□□□ -2.09
PCDHB3Q9Y5E6 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2□□□□□ -2.09
PCDHB3Q9Y5E6 RNU1-78P-201ENST00000391248 165 ntBASIC2□□□□□ -2.09
PCDHB3Q9Y5E6 AL157398.1-201ENST00000452981 186 ntBASIC2□□□□□ -2.09
PCDHB3Q9Y5E6 AC018659.1-201ENST00000551083 169 ntBASIC2□□□□□ -2.09
PCDHB3Q9Y5E6 MIR4460-201ENST00000577862 86 ntBASIC2□□□□□ -2.09
PCDHB3Q9Y5E6 AC002350.1-201ENST00000490759 375 ntBASIC1.99□□□□□ -2.09
PCDHB3Q9Y5E6 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.99□□□□□ -2.09
PCDHB3Q9Y5E6 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.99□□□□□ -2.09
PCDHB3Q9Y5E6 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 SNORA7.1-201ENST00000363750 139 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 Y_RNA.250-201ENST00000364542 110 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 MIR583-201ENST00000384846 75 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 MIR630-201ENST00000384957 97 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 SNORA26.9-201ENST00000391322 122 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 RNU6-135P-201ENST00000516769 101 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 RNU6-902P-201ENST00000517212 91 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 MIR4639-201ENST00000584938 69 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 MIR4781-201ENST00000585250 76 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 AC244669.1-204ENST00000621564 178 ntBASIC1.98□□□□□ -2.09
PCDHB3Q9Y5E6 RNU6-1162P-201ENST00000384443 104 ntBASIC1.97□□□□□ -2.09
PCDHB3Q9Y5E6 MIR548C-201ENST00000384815 97 ntBASIC1.97□□□□□ -2.09
PCDHB3Q9Y5E6 AC008834.1-201ENST00000511612 175 ntBASIC1.97□□□□□ -2.09
PCDHB3Q9Y5E6 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.97□□□□□ -2.09
PCDHB3Q9Y5E6 uc_338.20-201ENST00000621563 178 ntBASIC1.97□□□□□ -2.09
PCDHB3Q9Y5E6 SNORD28-201ENST00000384706 75 ntBASIC1.96□□□□□ -2.1
PCDHB3Q9Y5E6 MIR521-2-201ENST00000384818 87 ntBASIC1.96□□□□□ -2.1
PCDHB3Q9Y5E6 RNA5SP364-201ENST00000516938 78 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 216.1 ms