Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR3122-201ENST00000577243 73 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 MIR548AG2-201ENST00000581228 64 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 MIR4781-201ENST00000585250 76 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 uc_338.16-201ENST00000621804 95 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
HIF3AQ9Y2N7 SNORD113.1-201ENST00000363280 73 ntBASIC1.58□□□□□ -2.16
HIF3AQ9Y2N7 SNORD115-44-201ENST00000365391 82 ntBASIC1.58□□□□□ -2.16
HIF3AQ9Y2N7 AC093423.1-201ENST00000440817 142 ntBASIC1.58□□□□□ -2.16
HIF3AQ9Y2N7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.57□□□□□ -2.16
HIF3AQ9Y2N7 AL691482.2-201ENST00000457453 84 ntBASIC1.57□□□□□ -2.16
HIF3AQ9Y2N7 RNU7-161P-201ENST00000517289 62 ntBASIC1.57□□□□□ -2.16
HIF3AQ9Y2N7 SNORA25.4-201ENST00000363666 124 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 RNU6-1126P-201ENST00000384002 107 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 SNORD116-24-201ENST00000384549 92 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 U3.27-201ENST00000391237 200 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 NAMPTP3-201ENST00000569273 224 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 AL109933.3-201ENST00000619095 188 ntBASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HIF3AQ9Y2N7 RNU6-1216P-201ENST00000362590 107 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 RNA5SP403-201ENST00000363598 108 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 MIR203A-201ENST00000384836 110 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 AC067940.1-201ENST00000458411 300 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 AL136317.1-201ENST00000612653 226 ntBASIC1.55□□□□□ -2.16
HIF3AQ9Y2N7 MIR222-201ENST00000384992 110 ntBASIC1.54□□□□□ -2.16
HIF3AQ9Y2N7 RNU6-982P-201ENST00000516216 102 ntBASIC1.54□□□□□ -2.16
HIF3AQ9Y2N7 MIR3920-201ENST00000581751 86 ntBASIC1.54□□□□□ -2.16
HIF3AQ9Y2N7 Y_RNA.174-201ENST00000363781 105 ntBASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 MIR644A-201ENST00000385262 94 ntBASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 RNU1-123P-201ENST00000458950 160 ntBASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 AL359821.1-201ENST00000605519 182 ntBASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 RMST_2.1-201ENST00000617263 136 ntBASIC1.53□□□□□ -2.16
HIF3AQ9Y2N7 Y_RNA.338-201ENST00000365320 114 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-54P-201ENST00000365563 107 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 SNORA26.9-201ENST00000391322 122 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 MIR1827-201ENST00000408549 66 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 SNORD75.2-201ENST00000408784 58 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 AC002429.1-201ENST00000437672 148 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-752P-201ENST00000516376 102 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 MIR4255-201ENST00000579351 72 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 AC084768.2-201ENST00000622736 221 ntBASIC1.52□□□□□ -2.17
HIF3AQ9Y2N7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
HIF3AQ9Y2N7 Y_RNA.676-201ENST00000516393 96 ntBASIC1.51□□□□□ -2.17
HIF3AQ9Y2N7 MIR6845-201ENST00000613182 61 ntBASIC1.51□□□□□ -2.17
HIF3AQ9Y2N7 MIR6509-201ENST00000614603 85 ntBASIC1.51□□□□□ -2.17
HIF3AQ9Y2N7 SNORA25-201ENST00000384384 134 ntBASIC1.5□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
HIF3AQ9Y2N7 MIR519E-201ENST00000385075 84 ntBASIC1.5□□□□□ -2.17
HIF3AQ9Y2N7 AL603825.1-201ENST00000438481 80 ntBASIC1.5□□□□□ -2.17
HIF3AQ9Y2N7 RNU1-17P-201ENST00000363022 152 ntBASIC1.49□□□□□ -2.17
HIF3AQ9Y2N7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
HIF3AQ9Y2N7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.49□□□□□ -2.17
HIF3AQ9Y2N7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
HIF3AQ9Y2N7 RNA5SP327-201ENST00000362494 101 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-495P-201ENST00000362995 107 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 RNA5SP363-201ENST00000365072 115 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-1039P-201ENST00000383931 107 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 MIR617-201ENST00000385030 97 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 SNORD89-201ENST00000390981 114 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 AC067863.3-201ENST00000624172 122 ntBASIC1.48□□□□□ -2.17
HIF3AQ9Y2N7 RNA5SP117-201ENST00000365294 118 ntBASIC1.47□□□□□ -2.17
HIF3AQ9Y2N7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
HIF3AQ9Y2N7 MTND4LP19-201ENST00000403051 166 ntBASIC1.47□□□□□ -2.17
HIF3AQ9Y2N7 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.47□□□□□ -2.17
HIF3AQ9Y2N7 RNU6-1187P-201ENST00000364771 110 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 RNU6V-201ENST00000384105 107 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 MIR548L-201ENST00000408303 86 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 AC002350.1-201ENST00000490759 375 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 MIR502-201ENST00000606349 86 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 MIR548O2-201ENST00000616090 70 ntBASIC1.46□□□□□ -2.18
HIF3AQ9Y2N7 Y_RNA.164-201ENST00000363709 102 ntBASIC1.45□□□□□ -2.18
HIF3AQ9Y2N7 SNORD42B-201ENST00000458893 67 ntBASIC1.45□□□□□ -2.18
HIF3AQ9Y2N7 SNORA25.15-201ENST00000516487 89 ntBASIC1.45□□□□□ -2.18
HIF3AQ9Y2N7 MIR4511-201ENST00000582784 87 ntBASIC1.45□□□□□ -2.18
HIF3AQ9Y2N7 SNORA7.1-201ENST00000363750 139 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 MIR216B-201ENST00000390186 82 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 SNORA40.6-201ENST00000391153 128 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 RNU7-24P-201ENST00000458867 62 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-469P-201ENST00000516253 101 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-1110P-201ENST00000516462 101 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 AC244669.1-204ENST00000621564 178 ntBASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-668P-201ENST00000364180 107 ntBASIC1.43□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
HIF3AQ9Y2N7 FABP5P4-201ENST00000437203 171 ntBASIC1.43□□□□□ -2.18
HIF3AQ9Y2N7 RNA5SP147-201ENST00000516493 109 ntBASIC1.43□□□□□ -2.18
HIF3AQ9Y2N7 MIR8081-201ENST00000611533 95 ntBASIC1.43□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-716P-201ENST00000365621 103 ntBASIC1.42□□□□□ -2.18
HIF3AQ9Y2N7 MIR19B1-201ENST00000384829 87 ntBASIC1.42□□□□□ -2.18
HIF3AQ9Y2N7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.42□□□□□ -2.18
HIF3AQ9Y2N7 MIR3657-201ENST00000584818 117 ntBASIC1.42□□□□□ -2.18
HIF3AQ9Y2N7 AC103706.3-201ENST00000636297 85 ntBASIC1.42□□□□□ -2.18
HIF3AQ9Y2N7 SNORA25.8-201ENST00000364831 128 ntBASIC1.41□□□□□ -2.18
HIF3AQ9Y2N7 RNA5SP190-201ENST00000365222 118 ntBASIC1.41□□□□□ -2.18
HIF3AQ9Y2N7 MTND4LP1-201ENST00000446263 157 ntBASIC1.41□□□□□ -2.18
HIF3AQ9Y2N7 U7.7-201ENST00000459276 60 ntBASIC1.41□□□□□ -2.18
HIF3AQ9Y2N7 RNU6-990P-201ENST00000364385 104 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms