Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 U7.7-201ENST00000459276 60 ntBASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 RNU6-469P-201ENST00000516253 101 ntBASIC1.84□□□□□ -2.11
LIMD1Q9UGP4 RNU6-1015P-201ENST00000517121 99 ntBASIC1.84□□□□□ -2.11
LIMD1Q9UGP4 ZNF209P-201ENST00000593450 2304 ntBASIC1.84□□□□□ -2.12
LIMD1Q9UGP4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 MIR200A-201ENST00000384875 90 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 RNU6-587P-201ENST00000391282 106 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 AC002350.1-201ENST00000490759 375 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 U6.81-201ENST00000612550 106 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNA5SP327-201ENST00000362494 101 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 Y_RNA.224-201ENST00000364308 111 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-154P-201ENST00000384306 106 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR19B1-201ENST00000384829 87 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR2113-201ENST00000459007 91 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-719P-201ENST00000516671 104 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-590P-201ENST00000365039 107 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 SNORD105-201ENST00000386910 85 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-634P-201ENST00000459134 106 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 SNORD89-201ENST00000390981 114 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU7-74P-201ENST00000459104 62 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU6-687P-201ENST00000516443 89 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU7-161P-201ENST00000517289 62 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 AC067863.3-201ENST00000624172 122 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 RNU7-104P-201ENST00000459398 79 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 snoU13.18-201ENST00000459483 104 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 RNU6-539P-201ENST00000516665 103 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 MIR4639-201ENST00000584938 69 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 SNORA16.1-201ENST00000364597 132 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR617-201ENST00000385030 97 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR3920-201ENST00000581751 86 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR3675-201ENST00000583661 73 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR154-201ENST00000385243 84 ntBASIC1.77□□□□□ -2.13
LIMD1Q9UGP4 RNU6-752P-201ENST00000516376 102 ntBASIC1.77□□□□□ -2.13
LIMD1Q9UGP4 RNU6-824P-201ENST00000363724 104 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 RNU1-42P-201ENST00000364033 160 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 MIR1276-201ENST00000408707 83 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 RNU6-274P-201ENST00000459566 107 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 AC025627.3-201ENST00000582078 182 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 RNU6-1241P-201ENST00000384536 107 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 SNORD53B-201ENST00000577887 78 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 MIR6504-201ENST00000613520 61 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 MIR4419B-201ENST00000577260 68 ntBASIC1.74□□□□□ -2.13
LIMD1Q9UGP4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 RNU6-392P-201ENST00000364926 101 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 SNORD26-201ENST00000384147 75 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 MIR664A-201ENST00000626086 82 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 RNU1-123P-201ENST00000458950 160 ntBASIC1.72□□□□□ -2.13
LIMD1Q9UGP4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.72□□□□□ -2.13
LIMD1Q9UGP4 SNORA7.1-201ENST00000363750 139 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 SNORD28-201ENST00000384706 75 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR644A-201ENST00000385262 94 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR3122-201ENST00000577243 73 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR548AG2-201ENST00000581228 64 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AL078603.1-201ENST00000603824 313 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AC012493.3-201ENST00000604494 112 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR8053-201ENST00000613344 75 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR4773-1-201ENST00000637203 78 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 RNU6-330P-201ENST00000363015 107 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 MIR573-201ENST00000384964 99 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 RNU7-24P-201ENST00000458867 62 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 AC244669.1-204ENST00000621564 178 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 SNORD114-24-201ENST00000365029 72 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 RNU6-649P-201ENST00000384463 107 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 MIR548L-201ENST00000408303 86 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 SNORD75.2-201ENST00000408784 58 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 RPS29P23-201ENST00000458635 123 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORA25.8-201ENST00000364831 128 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORD48-201ENST00000364953 64 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 MIR519E-201ENST00000385075 84 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORD41.1-201ENST00000391000 69 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORA67.6-201ENST00000391093 99 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 RNU6-382P-201ENST00000365181 106 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 RNU1-92P-201ENST00000517017 135 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 MIR4452-201ENST00000583004 71 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 MIR548O2-201ENST00000616090 70 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 SNORD18A-201ENST00000363753 72 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 RNU1-124P-201ENST00000363861 145 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 RNU6-42P-201ENST00000384165 107 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 SNORD124-201ENST00000459577 104 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 242.2 ms