Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 HAR1A.1-201ENST00000459583 118 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 MIR548AE1-201ENST00000583292 70 ntBASIC-0.36□□□□□ -2.47
LHX3Q9UBR4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.36□□□□□ -2.47
LHX3Q9UBR4 AL442128.1-201ENST00000615151 90 ntBASIC-0.36□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.37□□□□□ -2.47
LHX3Q9UBR4 RNA5SP275-201ENST00000363936 118 ntBASIC-0.37□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.37□□□□□ -2.47
LHX3Q9UBR4 RNA5SP368-201ENST00000364298 116 ntBASIC-0.37□□□□□ -2.47
LHX3Q9UBR4 U8.6-201ENST00000364939 135 ntBASIC-0.37□□□□□ -2.47
LHX3Q9UBR4 SNORD49B-201ENST00000365172 72 ntBASIC-0.38□□□□□ -2.47
LHX3Q9UBR4 AC096531.1-201ENST00000419107 107 ntBASIC-0.38□□□□□ -2.47
LHX3Q9UBR4 MTND4LP9-201ENST00000427694 174 ntBASIC-0.38□□□□□ -2.47
LHX3Q9UBR4 AC109327.2-201ENST00000448339 378 ntBASIC-0.38□□□□□ -2.47
LHX3Q9UBR4 AC090425.1-201ENST00000610007 140 ntBASIC-0.38□□□□□ -2.47
LHX3Q9UBR4 MIR101-1-201ENST00000362265 75 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 MT-TY-201ENST00000387409 66 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 snoU13.19-201ENST00000459148 104 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 AL162726.3-218ENST00000636401 95 ntBASIC-0.39□□□□□ -2.47
LHX3Q9UBR4 RNU6-154P-201ENST00000384306 106 ntBASIC-0.4□□□□□ -2.47
LHX3Q9UBR4 RNU6-466P-201ENST00000391224 103 ntBASIC-0.4□□□□□ -2.47
LHX3Q9UBR4 RNA5SP451-201ENST00000410588 110 ntBASIC-0.4□□□□□ -2.47
LHX3Q9UBR4 RNA5SP25-201ENST00000410815 110 ntBASIC-0.4□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 AC244250.2-201ENST00000418731 148 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 MIR3666-201ENST00000607845 111 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 MIR6507-201ENST00000613630 70 ntBASIC-0.41□□□□□ -2.48
LHX3Q9UBR4 SNORD114-29-201ENST00000364819 70 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 RNY4P3-201ENST00000365254 95 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 SNORD101-201ENST00000384027 73 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 snoU13.11-201ENST00000459219 104 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 RNU6-772P-201ENST00000516042 105 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 RNU7-200P-201ENST00000516105 62 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 AC096720.1-201ENST00000604441 183 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 AC108676.2-201ENST00000605225 163 ntBASIC-0.42□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 SNORD14C-201ENST00000365382 88 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 SNORA40-201ENST00000388090 126 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 MIR4696-201ENST00000581431 70 ntBASIC-0.43□□□□□ -2.48
LHX3Q9UBR4 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.44□□□□□ -2.48
LHX3Q9UBR4 SNORD114-15-201ENST00000364687 72 ntBASIC-0.44□□□□□ -2.48
LHX3Q9UBR4 RNU6-480P-201ENST00000384332 107 ntBASIC-0.44□□□□□ -2.48
LHX3Q9UBR4 MIR577-201ENST00000385196 96 ntBASIC-0.44□□□□□ -2.48
LHX3Q9UBR4 RNU6-175P-201ENST00000516896 107 ntBASIC-0.44□□□□□ -2.48
LHX3Q9UBR4 AL157777.2-201ENST00000258070 137 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RNU6-664P-201ENST00000362381 107 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 MIR539-201ENST00000365690 78 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RNU6-30P-201ENST00000384561 107 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 MIR196A2-201ENST00000385189 110 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RNU6-257P-201ENST00000410238 98 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RPS29P8-201ENST00000445109 171 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RNU6-346P-201ENST00000516288 111 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 MIR548AZ-201ENST00000616567 95 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 AL035470.1-201ENST00000622571 220 ntBASIC-0.45□□□□□ -2.48
LHX3Q9UBR4 RNA5SP205-201ENST00000364653 136 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 RNU6-811P-201ENST00000384069 107 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 RNU7-107P-201ENST00000459121 61 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 SNORD126-201ENST00000459475 77 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 AC007012.1-201ENST00000567192 175 ntBASIC-0.46□□□□□ -2.48
LHX3Q9UBR4 MIR655-201ENST00000362159 97 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 MIR224-201ENST00000384889 81 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 MIR652-201ENST00000385278 98 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 MIR4263-201ENST00000584745 83 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 RNU6-86P-201ENST00000606534 107 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 AC025521.1-201ENST00000621624 286 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 MIR4788-201ENST00000639104 80 ntBASIC-0.47□□□□□ -2.48
LHX3Q9UBR4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.48□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.48□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.48□□□□□ -2.49
LHX3Q9UBR4 RNU6-255P-201ENST00000516957 105 ntBASIC-0.48□□□□□ -2.49
LHX3Q9UBR4 MIR20A-201ENST00000362279 71 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 RNU6-832P-201ENST00000363319 107 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 SNORA32.3-201ENST00000384772 121 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 RNU6-935P-201ENST00000410371 100 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 RNU6-971P-201ENST00000516920 106 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 MIR4694-201ENST00000578534 80 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 uc_338.36-201ENST00000622331 158 ntBASIC-0.49□□□□□ -2.49
LHX3Q9UBR4 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.5□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 223.6 ms