Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-228P-201ENST00000362700 106 ntBASIC1.44□□□□□ -2.18
CCDC87Q9NVE4 RNU6-132P-201ENST00000383863 107 ntBASIC1.44□□□□□ -2.18
CCDC87Q9NVE4 RNU6-787P-201ENST00000384032 107 ntBASIC1.44□□□□□ -2.18
CCDC87Q9NVE4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 RNU6-664P-201ENST00000362381 107 ntBASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 SNORD115-44-201ENST00000365391 82 ntBASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.374-201ENST00000365606 101 ntBASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 SNORD101-201ENST00000384027 73 ntBASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.221-201ENST00000364248 96 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.316-201ENST00000365118 111 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 RNA5SP292-201ENST00000390974 118 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 AL606490.4-201ENST00000423117 127 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 RNU6-469P-201ENST00000516253 101 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 RNA5SP255-201ENST00000516370 107 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 MIR5000-201ENST00000577717 103 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 MIR4696-201ENST00000581431 70 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 RN7SL793P-201ENST00000583259 296 ntBASIC1.42□□□□□ -2.18
CCDC87Q9NVE4 MIRLET7F1-201ENST00000362202 87 ntBASIC1.41□□□□□ -2.18
CCDC87Q9NVE4 RNU6-624P-201ENST00000363411 107 ntBASIC1.41□□□□□ -2.18
CCDC87Q9NVE4 MIR1255A-201ENST00000408338 113 ntBASIC1.41□□□□□ -2.18
CCDC87Q9NVE4 SNORD115-24-201ENST00000363528 82 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 Y_RNA.313-201ENST00000365095 103 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 RNU6-652P-201ENST00000365488 107 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 MIR573-201ENST00000384964 99 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 MIR150-201ENST00000385048 84 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 U6.100-201ENST00000636230 99 ntBASIC1.4□□□□□ -2.19
CCDC87Q9NVE4 RNA5SP403-201ENST00000363598 108 ntBASIC1.39□□□□□ -2.19
CCDC87Q9NVE4 Y_RNA.660-201ENST00000516002 120 ntBASIC1.39□□□□□ -2.19
CCDC87Q9NVE4 AC211469.2-201ENST00000605461 205 ntBASIC1.39□□□□□ -2.19
CCDC87Q9NVE4 RNY4P3-201ENST00000365254 95 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 RNU6-129P-201ENST00000391022 107 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 RNU6-279P-201ENST00000391297 101 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 FGF7P7-201ENST00000514120 227 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 RNA5SP395-201ENST00000516567 118 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 RNU6-638P-201ENST00000516582 104 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 RNU6-557P-201ENST00000516842 110 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 MIR4639-201ENST00000584938 69 ntBASIC1.38□□□□□ -2.19
CCDC87Q9NVE4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 RNU6-315P-201ENST00000362666 107 ntBASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 RNU6-939P-201ENST00000384634 107 ntBASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 RNU6-935P-201ENST00000410371 100 ntBASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 RNU7-13P-201ENST00000516413 62 ntBASIC1.37□□□□□ -2.19
CCDC87Q9NVE4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC87Q9NVE4 MIR373-201ENST00000362273 69 ntBASIC1.36□□□□□ -2.19
CCDC87Q9NVE4 RNU4-45P-201ENST00000365469 141 ntBASIC1.36□□□□□ -2.19
CCDC87Q9NVE4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC87Q9NVE4 MIR216A-201ENST00000385063 110 ntBASIC1.35□□□□□ -2.19
CCDC87Q9NVE4 RNU6-1057P-201ENST00000517162 102 ntBASIC1.35□□□□□ -2.19
CCDC87Q9NVE4 MIR3612-201ENST00000579753 87 ntBASIC1.35□□□□□ -2.19
CCDC87Q9NVE4 SNORA63.2-201ENST00000362603 126 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 RNU6-1229P-201ENST00000364295 107 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 Y_RNA.264-201ENST00000364665 102 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 MIR644A-201ENST00000385262 94 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 RNU6-380P-201ENST00000410207 107 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 RNU7-161P-201ENST00000517289 62 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 SNORD114-21-201ENST00000606412 72 ntBASIC1.34□□□□□ -2.19
CCDC87Q9NVE4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 RNU6-24P-201ENST00000384440 107 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 SNORD28-201ENST00000384706 75 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 CYP3A137P-201ENST00000562436 69 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 AC067863.3-201ENST00000624172 122 ntBASIC1.33□□□□□ -2.2
CCDC87Q9NVE4 MIR216B-201ENST00000390186 82 ntBASIC1.32□□□□□ -2.2
CCDC87Q9NVE4 U3.27-201ENST00000391237 200 ntBASIC1.32□□□□□ -2.2
CCDC87Q9NVE4 MIR4661-201ENST00000582720 75 ntBASIC1.32□□□□□ -2.2
CCDC87Q9NVE4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.32□□□□□ -2.2
CCDC87Q9NVE4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.31□□□□□ -2.2
CCDC87Q9NVE4 RNU6-1051P-201ENST00000365471 102 ntBASIC1.31□□□□□ -2.2
CCDC87Q9NVE4 RNU6-287P-201ENST00000516230 98 ntBASIC1.31□□□□□ -2.2
CCDC87Q9NVE4 MIR4712-201ENST00000583750 82 ntBASIC1.31□□□□□ -2.2
CCDC87Q9NVE4 RNU5F-1-201ENST00000362507 117 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 SNORD99-201ENST00000408612 74 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 RNA5SP225-201ENST00000410874 135 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 RNU7-74P-201ENST00000459104 62 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 RNU7-104P-201ENST00000459398 79 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 RNU6-857P-201ENST00000515893 110 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 MIR3678-201ENST00000578455 94 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 MIR6857-201ENST00000613267 93 ntBASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.3□□□□□ -2.2
CCDC87Q9NVE4 SNORD18A-201ENST00000363753 72 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 RNU4-38P-201ENST00000364472 129 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 RNU6-686P-201ENST00000364839 107 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 SNORD77.2-201ENST00000391045 68 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 AL450471.1-201ENST00000447509 127 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 MIR3920-201ENST00000581751 86 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 AC244669.1-204ENST00000621564 178 ntBASIC1.29□□□□□ -2.2
CCDC87Q9NVE4 Y_RNA.94-201ENST00000363068 106 ntBASIC1.28□□□□□ -2.2
CCDC87Q9NVE4 AC011195.1-201ENST00000578177 177 ntBASIC1.28□□□□□ -2.2
CCDC87Q9NVE4 MIR3973-201ENST00000579824 107 ntBASIC1.28□□□□□ -2.2
CCDC87Q9NVE4 RNU6-1094P-201ENST00000362416 104 ntBASIC1.27□□□□□ -2.21
CCDC87Q9NVE4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.27□□□□□ -2.21
CCDC87Q9NVE4 MIR532-201ENST00000385025 91 ntBASIC1.27□□□□□ -2.21
CCDC87Q9NVE4 RNA5SP47-201ENST00000517230 109 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 326.6 ms