Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 uc_338.16-201ENST00000621804 95 ntBASIC1.85□□□□□ -2.11
NUCKS1Q9H1E3 RNU1-119P-201ENST00000391122 165 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 RNU6-994P-201ENST00000410507 111 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 RNU7-161P-201ENST00000517289 62 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 AC015712.3-201ENST00000559380 164 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 MIR4524B-201ENST00000581569 115 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 AL157834.3-201ENST00000615543 103 ntBASIC1.84□□□□□ -2.11
NUCKS1Q9H1E3 RNU6-141P-201ENST00000410499 105 ntBASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 AC079150.2-201ENST00000443733 78 ntBASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 AC108210.2-201ENST00000503681 201 ntBASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 RNU6-548P-201ENST00000517083 115 ntBASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 MIR6509-201ENST00000614603 85 ntBASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.83□□□□□ -2.12
NUCKS1Q9H1E3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
NUCKS1Q9H1E3 MIR203A-201ENST00000384836 110 ntBASIC1.82□□□□□ -2.12
NUCKS1Q9H1E3 MIR216B-201ENST00000390186 82 ntBASIC1.82□□□□□ -2.12
NUCKS1Q9H1E3 Y_RNA.174-201ENST00000363781 105 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 SNORA80D-201ENST00000384488 135 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 MIR617-201ENST00000385030 97 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 MIR100-201ENST00000385259 80 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 MTND4LP1-201ENST00000446263 157 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 AC008834.1-201ENST00000511612 175 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 AL359821.1-201ENST00000605519 182 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 MIR548O2-201ENST00000616090 70 ntBASIC1.81□□□□□ -2.12
NUCKS1Q9H1E3 RNU6-668P-201ENST00000364180 107 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 RNU6-910P-201ENST00000390844 107 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 RNU7-104P-201ENST00000459398 79 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 MIR4255-201ENST00000579351 72 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 AC073869.9-201ENST00000641610 120 ntBASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
NUCKS1Q9H1E3 RNA5SP363-201ENST00000365072 115 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 RNU6-54P-201ENST00000365563 107 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 MIR520F-201ENST00000384824 87 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 RNU7-90P-201ENST00000459216 62 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 MIR3198-2-201ENST00000577868 80 ntBASIC1.79□□□□□ -2.12
NUCKS1Q9H1E3 RNA5SP99-201ENST00000364020 114 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 RNU6-614P-201ENST00000384369 107 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 MIR519E-201ENST00000385075 84 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 RNU1-78P-201ENST00000391248 165 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 SNORD79.1-201ENST00000516069 84 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 SNORA25.15-201ENST00000516487 89 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 MIR4769-201ENST00000584126 77 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 U6.59-201ENST00000615686 107 ntBASIC1.78□□□□□ -2.12
NUCKS1Q9H1E3 MIR1-1-201ENST00000362147 71 ntBASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 Y_RNA.375-201ENST00000365625 101 ntBASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 RNU1-123P-201ENST00000458950 160 ntBASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-542P-201ENST00000516405 103 ntBASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.77□□□□□ -2.13
NUCKS1Q9H1E3 RNU1-17P-201ENST00000363022 152 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 RNA5SP190-201ENST00000365222 118 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 AC067940.1-201ENST00000458411 300 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 MIR3657-201ENST00000584818 117 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 AC092634.7-201ENST00000621022 103 ntBASIC1.76□□□□□ -2.13
NUCKS1Q9H1E3 SNORD13-201ENST00000459299 104 ntBASIC1.75□□□□□ -2.13
NUCKS1Q9H1E3 MIR502-201ENST00000606349 86 ntBASIC1.75□□□□□ -2.13
NUCKS1Q9H1E3 AL353997.5-201ENST00000618886 171 ntBASIC1.75□□□□□ -2.13
NUCKS1Q9H1E3 RNA5SP432-201ENST00000362480 116 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-645P-201ENST00000364649 106 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 MIR1827-201ENST00000408549 66 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 SNORD42B-201ENST00000458893 67 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 MIR4422-201ENST00000581938 83 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 AL136317.1-201ENST00000612653 226 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 RMST_2.1-201ENST00000617263 136 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 AC067863.3-201ENST00000624172 122 ntBASIC1.74□□□□□ -2.13
NUCKS1Q9H1E3 RNU6V-201ENST00000384105 107 ntBASIC1.73□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-955P-201ENST00000410497 104 ntBASIC1.73□□□□□ -2.13
NUCKS1Q9H1E3 MIR4781-201ENST00000585250 76 ntBASIC1.73□□□□□ -2.13
NUCKS1Q9H1E3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-829P-201ENST00000363700 112 ntBASIC1.72□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-260P-201ENST00000384092 107 ntBASIC1.72□□□□□ -2.13
NUCKS1Q9H1E3 RNU6-902P-201ENST00000517212 91 ntBASIC1.72□□□□□ -2.13
NUCKS1Q9H1E3 SNORA25.5-201ENST00000363782 126 ntBASIC1.71□□□□□ -2.14
NUCKS1Q9H1E3 MIR7-2-201ENST00000384970 110 ntBASIC1.71□□□□□ -2.14
NUCKS1Q9H1E3 SNORA17.3-201ENST00000391159 129 ntBASIC1.71□□□□□ -2.14
NUCKS1Q9H1E3 RNA5SP192-201ENST00000364404 120 ntBASIC1.7□□□□□ -2.14
NUCKS1Q9H1E3 MIR644A-201ENST00000385262 94 ntBASIC1.7□□□□□ -2.14
NUCKS1Q9H1E3 RNU6-482P-201ENST00000391068 107 ntBASIC1.7□□□□□ -2.14
NUCKS1Q9H1E3 RNU6-237P-201ENST00000515985 71 ntBASIC1.7□□□□□ -2.14
NUCKS1Q9H1E3 SNORA40.17-201ENST00000517256 115 ntBASIC1.7□□□□□ -2.14
NUCKS1Q9H1E3 RNU6-1079P-201ENST00000362861 110 ntBASIC1.69□□□□□ -2.14
NUCKS1Q9H1E3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.69□□□□□ -2.14
NUCKS1Q9H1E3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.69□□□□□ -2.14
NUCKS1Q9H1E3 SNORA2.1-201ENST00000363089 137 ntBASIC1.68□□□□□ -2.14
NUCKS1Q9H1E3 Y_RNA.236-201ENST00000364427 111 ntBASIC1.68□□□□□ -2.14
NUCKS1Q9H1E3 AC002350.1-201ENST00000490759 375 ntBASIC1.68□□□□□ -2.14
NUCKS1Q9H1E3 SCARNA21.1-201ENST00000515996 128 ntBASIC1.68□□□□□ -2.14
NUCKS1Q9H1E3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 RNU6-990P-201ENST00000364385 104 ntBASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 SNORD41.1-201ENST00000391000 69 ntBASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 RNU7-74P-201ENST00000459104 62 ntBASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 SNORA70.22-201ENST00000517160 124 ntBASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 MIR466-201ENST00000580653 84 ntBASIC1.67□□□□□ -2.14
NUCKS1Q9H1E3 BX248123.2-201ENST00000606318 124 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms