Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-380P-201ENST00000410207 107 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 RNU6-1015P-201ENST00000517121 99 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 MIR1297-201ENST00000637311 77 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.12-201ENST00000362393 112 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 RNU6-411P-201ENST00000384451 107 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.596-201ENST00000410462 109 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 AC067940.1-201ENST00000458411 300 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 AC114801.3-201ENST00000510231 177 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 RNU6-687P-201ENST00000516443 89 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 YWHAEP2-201ENST00000580066 112 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 YWHAEP3-201ENST00000582767 121 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 MIR664A-201ENST00000626086 82 ntBASIC1.22□□□□□ -2.21
CLIP3Q96DZ5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.21
CLIP3Q96DZ5 RNU6-364P-201ENST00000384387 107 ntBASIC1.21□□□□□ -2.22
CLIP3Q96DZ5 MIR1287-201ENST00000408492 90 ntBASIC1.21□□□□□ -2.22
CLIP3Q96DZ5 OR2A41P-201ENST00000473586 105 ntBASIC1.21□□□□□ -2.22
CLIP3Q96DZ5 RNU6-807P-201ENST00000516805 107 ntBASIC1.21□□□□□ -2.22
CLIP3Q96DZ5 RNU6-330P-201ENST00000363015 107 ntBASIC1.2□□□□□ -2.22
CLIP3Q96DZ5 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.2□□□□□ -2.22
CLIP3Q96DZ5 MIR2113-201ENST00000459007 91 ntBASIC1.2□□□□□ -2.22
CLIP3Q96DZ5 MIR3660-201ENST00000584845 100 ntBASIC1.2□□□□□ -2.22
CLIP3Q96DZ5 uc_338.16-201ENST00000621804 95 ntBASIC1.2□□□□□ -2.22
CLIP3Q96DZ5 Y_RNA.32-201ENST00000362589 110 ntBASIC1.19□□□□□ -2.22
CLIP3Q96DZ5 MIR499A-201ENST00000384903 122 ntBASIC1.19□□□□□ -2.22
CLIP3Q96DZ5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.19□□□□□ -2.22
CLIP3Q96DZ5 RNU6-935P-201ENST00000410371 100 ntBASIC1.19□□□□□ -2.22
CLIP3Q96DZ5 RNU6-70P-201ENST00000516438 60 ntBASIC1.19□□□□□ -2.22
CLIP3Q96DZ5 RNU5F-1-201ENST00000362507 117 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 Y_RNA.36-201ENST00000362602 112 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 RNU6-340P-201ENST00000364005 107 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 RNU6-154P-201ENST00000384306 106 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 MIR758-201ENST00000390227 88 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 MIR1827-201ENST00000408549 66 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 Y_RNA.606-201ENST00000410579 103 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 U7.7-201ENST00000459276 60 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 RNU6-977P-201ENST00000516411 103 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 SNORA31.14-201ENST00000516728 116 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 MIR4661-201ENST00000582720 75 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 AL136317.1-201ENST00000612653 226 ntBASIC1.18□□□□□ -2.22
CLIP3Q96DZ5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 MIR451A-201ENST00000385059 72 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 RNU6-634P-201ENST00000459134 106 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 RNU6-287P-201ENST00000516230 98 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 RNA5SP255-201ENST00000516370 107 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 RNU6-1110P-201ENST00000516462 101 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.17□□□□□ -2.22
CLIP3Q96DZ5 MIR1-1-201ENST00000362147 71 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNA5SP403-201ENST00000363598 108 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNU6-824P-201ENST00000363724 104 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNY4P3-201ENST00000365254 95 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 MIR100-201ENST00000385259 80 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNU1-119P-201ENST00000391122 165 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNU6-1052P-201ENST00000411398 104 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 Y_RNA.681-201ENST00000516445 113 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNU6-539P-201ENST00000516665 103 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RNU6-719P-201ENST00000516671 104 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 AC068338.1-201ENST00000565567 176 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 MIR548AG2-201ENST00000581228 64 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 RMST_2.1-201ENST00000617263 136 ntBASIC1.16□□□□□ -2.22
CLIP3Q96DZ5 Y_RNA.371-201ENST00000365591 113 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 MIR520F-201ENST00000384824 87 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 RNU6-587P-201ENST00000391282 106 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 RNU2-59P-201ENST00000410482 191 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 AC097510.1-201ENST00000510945 133 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 RNU7-161P-201ENST00000517289 62 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 U6.81-201ENST00000612550 106 ntBASIC1.15□□□□□ -2.23
CLIP3Q96DZ5 SNORD89-201ENST00000390981 114 ntBASIC1.14□□□□□ -2.23
CLIP3Q96DZ5 RNA5SP102-201ENST00000516865 106 ntBASIC1.14□□□□□ -2.23
CLIP3Q96DZ5 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.14□□□□□ -2.23
CLIP3Q96DZ5 Y_RNA.258-201ENST00000364613 105 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 MIR1276-201ENST00000408707 83 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 MIR3920-201ENST00000581751 86 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 AC025627.3-201ENST00000582078 182 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 MIR6504-201ENST00000613520 61 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
CLIP3Q96DZ5 SNORD115-24-201ENST00000363528 82 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 Y_RNA.174-201ENST00000363781 105 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 Y_RNA.224-201ENST00000364308 111 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 RNU6-590P-201ENST00000365039 107 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 SNORD115-31-201ENST00000365318 82 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 RNU6-1126P-201ENST00000384002 107 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 RNU6-1241P-201ENST00000384536 107 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 RNU6-540P-201ENST00000384622 101 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 MIR1285-1-201ENST00000408593 84 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CLIP3Q96DZ5 RNU6-1187P-201ENST00000364771 110 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 SNORD115-44-201ENST00000365391 82 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 Y_RNA.386-201ENST00000383913 105 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 SNORA8.1-201ENST00000384250 140 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 U3.27-201ENST00000391237 200 ntBASIC1.11□□□□□ -2.23
CLIP3Q96DZ5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 233.8 ms