Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FO082796.1-201ENST00000523795 183 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 NBR2-204ENST00000587322 63 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 AC119751.7-201ENST00000600494 245 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 Y_RNA.143-201ENST00000363520 106 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 RNU6-1085P-201ENST00000363576 107 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 MIR548G-201ENST00000408442 89 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 RNU2-38P-201ENST00000410856 79 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 Y_RNA.682-201ENST00000516457 100 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 AC048344.4-201ENST00000619744 527 ntBASIC-2.96□□□□□ -2.88
CUX1P39880 Y_RNA.51-201ENST00000362725 102 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 Y_RNA.394-201ENST00000383942 103 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 MIR203A-201ENST00000384836 110 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 RNU6-561P-201ENST00000516222 102 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 RNU6-1016P-201ENST00000516689 94 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 MIR3140-201ENST00000583685 90 ntBASIC-2.97□□□□□ -2.88
CUX1P39880 Y_RNA.813-201ENST00000364639 102 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 Y_RNA.474-201ENST00000384341 102 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-2.98□□□□□ -2.89
CUX1P39880 MTND5P5-201ENST00000503764 376 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 MIR1321-201ENST00000637766 79 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 MIRLET7F1-201ENST00000362202 87 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 MIR616-201ENST00000385293 97 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 MTND3P10-201ENST00000450967 341 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 RNU6-240P-201ENST00000516098 97 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 RNU6-65P-201ENST00000516332 98 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 MIR6509-201ENST00000614603 85 ntBASIC-2.98□□□□□ -2.89
CUX1P39880 RNU6-1272P-201ENST00000362776 107 ntBASIC-2.99□□□□□ -2.89
CUX1P39880 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-2.99□□□□□ -2.89
CUX1P39880 AF246928.1-201ENST00000623768 87 ntBASIC-2.99□□□□□ -2.89
CUX1P39880 MIR628-201ENST00000385229 95 ntBASIC-3□□□□□ -2.89
CUX1P39880 RNU6-696P-201ENST00000390834 107 ntBASIC-3□□□□□ -2.89
CUX1P39880 RNU4-43P-201ENST00000410628 137 ntBASIC-3□□□□□ -2.89
CUX1P39880 RNA5SP236-201ENST00000516169 116 ntBASIC-3□□□□□ -2.89
CUX1P39880 MIR3915-201ENST00000578518 97 ntBASIC-3□□□□□ -2.89
CUX1P39880 AL162413.1-201ENST00000603198 110 ntBASIC-3□□□□□ -2.89
CUX1P39880 Y_RNA.83-201ENST00000363005 113 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 Y_RNA.291-201ENST00000364886 113 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 SNORA24B-201ENST00000384176 131 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 AL021921.1-201ENST00000442774 93 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 Y_RNA.690-201ENST00000516603 95 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 Y_RNA.713-201ENST00000517013 96 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 VN1R91P-201ENST00000594377 169 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 AC006254.2-201ENST00000603259 279 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 AC138305.3-201ENST00000624988 240 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 AL606534.2-204ENST00000635008 178 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 AL512310.12-203ENST00000640543 90 ntBASIC-3.01□□□□□ -2.89
CUX1P39880 Y_RNA.152-201ENST00000363578 100 ntBASIC-3.02□□□□□ -2.89
CUX1P39880 RNU6-1090P-201ENST00000364065 94 ntBASIC-3.02□□□□□ -2.89
CUX1P39880 RNU6-1039P-201ENST00000383931 107 ntBASIC-3.02□□□□□ -2.89
CUX1P39880 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-3.02□□□□□ -2.89
CUX1P39880 AC005520.4-201ENST00000604337 90 ntBASIC-3.02□□□□□ -2.89
CUX1P39880 SNORD38.1-201ENST00000363863 68 ntBASIC-3.03□□□□□ -2.89
CUX1P39880 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 Y_RNA.236-201ENST00000364427 111 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 Y_RNA.509-201ENST00000384506 99 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 RNU6-120P-201ENST00000516077 103 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 MIR3657-201ENST00000584818 117 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 Y_RNA.773-201ENST00000607168 90 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 AL132765.2-201ENST00000610812 351 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 DLEU2_2.2-201ENST00000615474 90 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 MIR6739-201ENST00000622461 75 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.03□□□□□ -2.9
CUX1P39880 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 RNU5A-2P-201ENST00000384337 116 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 RNU6-1109P-201ENST00000391187 107 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 RNU7-125P-201ENST00000458760 62 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 RNY4P25-201ENST00000459254 96 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 U8.20-201ENST00000459445 131 ntBASIC-3.04□□□□□ -2.9
CUX1P39880 snoU2_19.4-201ENST00000364329 80 ntBASIC-3.05□□□□□ -2.9
CUX1P39880 Y_RNA.233-201ENST00000364407 101 ntBASIC-3.05□□□□□ -2.9
CUX1P39880 Y_RNA.314-201ENST00000365114 102 ntBASIC-3.05□□□□□ -2.9
CUX1P39880 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-3.05□□□□□ -2.9
CUX1P39880 Y_RNA.693-201ENST00000516641 110 ntBASIC-3.05□□□□□ -2.9
CUX1P39880 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.06□□□□□ -2.9
CUX1P39880 MIR513C-201ENST00000401352 84 ntBASIC-3.06□□□□□ -2.9
CUX1P39880 AL445567.1-201ENST00000439121 144 ntBASIC-3.06□□□□□ -2.9
CUX1P39880 Y_RNA.599-201ENST00000410489 109 ntBASIC-3.07□□□□□ -2.9
CUX1P39880 AC096644.2-201ENST00000429278 159 ntBASIC-3.07□□□□□ -2.9
CUX1P39880 MTATP6P21-201ENST00000440681 189 ntBASIC-3.07□□□□□ -2.9
CUX1P39880 MTND5P26-201ENST00000426018 1752 ntBASIC-3.07□□□□□ -2.9
CUX1P39880 UBE2WP1-201ENST00000362030 340 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-382P-201ENST00000365181 106 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-483P-201ENST00000384088 108 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-458P-201ENST00000384179 107 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-908P-201ENST00000410160 94 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-651P-201ENST00000411040 105 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-1018P-201ENST00000516577 106 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 RNU6-232P-201ENST00000517144 64 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 U6.58-201ENST00000613107 107 ntBASIC-3.08□□□□□ -2.9
CUX1P39880 SNORD113-3-201ENST00000364830 72 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-662P-201ENST00000384253 104 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 MIR122-201ENST00000385044 85 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 Y_RNA.629-201ENST00000411368 105 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-976P-201ENST00000516086 111 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-311P-201ENST00000516224 102 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU7-6P-201ENST00000516845 62 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 MIR3170-201ENST00000582699 77 ntBASIC-3.09□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms