Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AL450471.1-201ENST00000447509 127 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AC011195.1-201ENST00000578177 177 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR3678-201ENST00000578455 94 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR4639-201ENST00000584938 69 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORA63.2-201ENST00000362603 126 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORD18A-201ENST00000363753 72 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-129P-201ENST00000391022 107 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-935P-201ENST00000410371 100 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-287P-201ENST00000516230 98 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR3920-201ENST00000581751 86 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AC244669.1-204ENST00000621564 178 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR6767-201ENST00000637302 66 ntBASIC1.09□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.164-201ENST00000363709 102 ntBASIC1.08□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-478P-201ENST00000363904 110 ntBASIC1.08□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-939P-201ENST00000384634 107 ntBASIC1.08□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-279P-201ENST00000391297 101 ntBASIC1.08□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.08□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.94-201ENST00000363068 106 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-1229P-201ENST00000364295 107 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-1051P-201ENST00000365471 102 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNA5SP102-201ENST00000516865 106 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 AC067863.3-201ENST00000624172 122 ntBASIC1.07□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR18A-201ENST00000362310 71 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-1126P-201ENST00000384002 107 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-638P-201ENST00000516582 104 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-557P-201ENST00000516842 110 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNA5SP47-201ENST00000517230 109 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR548AG2-201ENST00000581228 64 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR4712-201ENST00000583750 82 ntBASIC1.06□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR451A-201ENST00000385059 72 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR2113-201ENST00000459007 91 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 FGF7P7-201ENST00000514120 227 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-857P-201ENST00000515893 110 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-1108P-201ENST00000516308 104 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR3140-201ENST00000583685 90 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 AL353765.1-201ENST00000605514 183 ntBASIC1.05□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-161P-201ENST00000363051 106 ntBASIC1.04□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-1057P-201ENST00000517162 102 ntBASIC1.04□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR3973-201ENST00000579824 107 ntBASIC1.04□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNU6-315P-201ENST00000362666 107 ntBASIC1.03□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.03□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR4698-201ENST00000577795 80 ntBASIC1.03□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 MIR4661-201ENST00000582720 75 ntBASIC1.03□□□□□ -2.24
NPHP3-ACAD11A0A0J9YXS1 RNY4P3-201ENST00000365254 95 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR617-201ENST00000385030 97 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SNORD77.2-201ENST00000391045 68 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-1052P-201ENST00000411398 104 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 snoU13.17-201ENST00000458802 104 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.660-201ENST00000516002 120 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-719P-201ENST00000516671 104 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIRLET7A1-201ENST00000362295 80 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-208P-201ENST00000362431 107 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU5F-1-201ENST00000362507 117 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-726P-201ENST00000364680 107 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-686P-201ENST00000364839 107 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SNORA25.9-201ENST00000365087 128 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU4-45P-201ENST00000365469 141 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-24P-201ENST00000384440 107 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SNORD41.1-201ENST00000391000 69 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNA5SP222-201ENST00000411039 105 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SCARNA16.5-201ENST00000517114 183 ntBASIC1.01□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-716P-201ENST00000365621 103 ntBASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR548L-201ENST00000408303 86 ntBASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR8070-201ENST00000616510 88 ntBASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 IST1-227ENST00000626438 126 ntTSL 5 BASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.264-201ENST00000364665 102 ntBASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR519E-201ENST00000385075 84 ntBASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR1276-201ENST00000408707 83 ntBASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SNORA36.1-201ENST00000363424 132 ntBASIC0.98□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 SNORA24B-201ENST00000384176 131 ntBASIC0.98□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR532-201ENST00000385025 91 ntBASIC0.98□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.98□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR6828-201ENST00000636181 60 ntBASIC0.98□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR337-201ENST00000362281 93 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.244-201ENST00000364484 109 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU1-93P-201ENST00000364704 169 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 MIR608-201ENST00000384820 100 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 U3.27-201ENST00000391237 200 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 RNA5SP94-201ENST00000516917 108 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.97□□□□□ -2.25
NPHP3-ACAD11A0A0J9YXS1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU7-74P-201ENST00000459104 62 ntBASIC0.96□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU6-1094P-201ENST00000362416 104 ntBASIC0.95□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 SNORD114-22-201ENST00000365423 72 ntBASIC0.95□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNY1P8-201ENST00000383970 114 ntBASIC0.95□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.12-201ENST00000362393 112 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 SNORA36.2-201ENST00000384004 127 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 178.7 ms