Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC099513.1-201ENST00000490423 301 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 uc_338.20-201ENST00000621563 178 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 SNORA3A-201ENST00000364113 130 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 RNU6-1052P-201ENST00000411398 104 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 AC097510.1-201ENST00000510945 133 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 RNU6-719P-201ENST00000516671 104 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 RNU7-193P-201ENST00000516723 65 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 U6.81-201ENST00000612550 106 ntBASIC2.26□□□□□ -2.05
COL17A1Q9UMD9 Y_RNA.239-201ENST00000364444 113 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 AL606490.4-201ENST00000423117 127 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 HMGN2P38-201ENST00000423806 265 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 AL354695.1-201ENST00000427935 228 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 SNORA31.17-201ENST00000516953 127 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 MIR6078-201ENST00000611069 100 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 AC008133.2-201ENST00000624540 351 ntBASIC2.25□□□□□ -2.05
COL17A1Q9UMD9 AL596028.1-201ENST00000326971 197 ntBASIC2.24□□□□□ -2.05
COL17A1Q9UMD9 RNA5SP212-201ENST00000391223 107 ntBASIC2.24□□□□□ -2.05
COL17A1Q9UMD9 SNORD63B-201ENST00000411005 70 ntBASIC2.24□□□□□ -2.05
COL17A1Q9UMD9 RNU6-940P-201ENST00000363433 104 ntBASIC2.23□□□□□ -2.05
COL17A1Q9UMD9 AC245884.12-201ENST00000615364 59 ntBASIC2.23□□□□□ -2.05
COL17A1Q9UMD9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.23□□□□□ -2.05
COL17A1Q9UMD9 RNU6-542P-201ENST00000516405 103 ntBASIC2.22□□□□□ -2.05
COL17A1Q9UMD9 MIR3660-201ENST00000584845 100 ntBASIC2.22□□□□□ -2.05
COL17A1Q9UMD9 AL096861.1-201ENST00000610899 123 ntBASIC2.22□□□□□ -2.05
COL17A1Q9UMD9 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.22□□□□□ -2.05
COL17A1Q9UMD9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
COL17A1Q9UMD9 SNORA24B-201ENST00000384176 131 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 MIR520C-201ENST00000385005 87 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 RPS27P16-201ENST00000425758 201 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 AC244023.1-201ENST00000426884 112 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 RNU6-1194P-201ENST00000516208 104 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 MIR4696-201ENST00000581431 70 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 AC242498.1-201ENST00000604134 111 ntBASIC2.21□□□□□ -2.06
COL17A1Q9UMD9 RNU6-664P-201ENST00000362381 107 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 RNU6-654P-201ENST00000364373 107 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 RNU6-668P-201ENST00000364180 107 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 snoU13.2-201ENST00000459201 104 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 RNU11-2P-201ENST00000516898 142 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 TRDV1-202ENST00000621643 102 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 MIR4773-1-201ENST00000637203 78 ntBASIC2.2□□□□□ -2.06
COL17A1Q9UMD9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 RNU6-1335P-201ENST00000365426 107 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 Y_RNA.375-201ENST00000365625 101 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 MIR588-201ENST00000384900 83 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 SNORD23.1-201ENST00000408212 104 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 RNU7-195P-201ENST00000458793 62 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 RNU6-531P-201ENST00000516694 104 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
COL17A1Q9UMD9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 RNU6-1312P-201ENST00000362425 108 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 SNORD101-201ENST00000384027 73 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 AC055731.1-201ENST00000474387 401 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 MIR3938-201ENST00000582157 103 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 MIR4251-201ENST00000635819 61 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 U6.100-201ENST00000636230 99 ntBASIC2.18□□□□□ -2.06
COL17A1Q9UMD9 SNORA16B-201ENST00000364674 135 ntBASIC2.17□□□□□ -2.06
COL17A1Q9UMD9 MIR514B-201ENST00000516774 80 ntBASIC2.17□□□□□ -2.06
COL17A1Q9UMD9 RNU6-753P-201ENST00000363926 107 ntBASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 RNA5SP259-201ENST00000365541 109 ntBASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 MTND4LP1-201ENST00000446263 157 ntBASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 TRAJ51-201ENST00000504127 63 ntBASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 SNORA25.16-201ENST00000516741 121 ntBASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
COL17A1Q9UMD9 RNU6-382P-201ENST00000365181 106 ntBASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 AC244098.3-201ENST00000424803 96 ntBASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 JTBP1-201ENST00000441314 247 ntBASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 SCARNA21.1-201ENST00000515996 128 ntBASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 RN7SL793P-201ENST00000583259 296 ntBASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
COL17A1Q9UMD9 AC080100.1-201ENST00000624239 5356 ntBASIC2.15□□□□□ -2.07
COL17A1Q9UMD9 AC023934.1-201ENST00000574529 2389 ntBASIC2.15□□□□□ -2.07
COL17A1Q9UMD9 Y_RNA.258-201ENST00000364613 105 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 Y_RNA.379-201ENST00000365653 102 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 RNU6-203P-201ENST00000384038 104 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR513A1-201ENST00000385138 129 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR653-201ENST00000385279 96 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 RNU6-274P-201ENST00000459566 107 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 RNU7-41P-201ENST00000515917 61 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 PRELID3BP2-201ENST00000605362 201 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR30D-201ENST00000362283 70 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR563-201ENST00000385080 79 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR320A-201ENST00000385302 82 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR4287-201ENST00000579398 78 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR3920-201ENST00000581751 86 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 MIR6740-201ENST00000618268 113 ntBASIC2.14□□□□□ -2.07
COL17A1Q9UMD9 Y_RNA.536-201ENST00000384621 113 ntBASIC2.13□□□□□ -2.07
COL17A1Q9UMD9 MIR194-1-201ENST00000384892 85 ntBASIC2.13□□□□□ -2.07
COL17A1Q9UMD9 RNU6-1177P-201ENST00000391058 104 ntBASIC2.13□□□□□ -2.07
COL17A1Q9UMD9 MIR5000-201ENST00000577717 103 ntBASIC2.13□□□□□ -2.07
COL17A1Q9UMD9 MIR548AD-201ENST00000584780 82 ntBASIC2.13□□□□□ -2.07
COL17A1Q9UMD9 RNA5SP276-201ENST00000362580 94 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms