Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORD113.1-201ENST00000363280 73 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 MIR504-201ENST00000385065 83 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 MIR320A-201ENST00000385302 82 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 MIR1289-2-201ENST00000408360 111 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 SNORD83.1-201ENST00000411362 77 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 RNU6-1265P-201ENST00000516342 103 ntBASIC1.8□□□□□ -2.12
CCDC39Q9UFE4 RNU6-1216P-201ENST00000362590 107 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 SNORD33-201ENST00000362761 85 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 AC138907.6-201ENST00000568401 126 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 AC138869.1-201ENST00000568623 124 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 MIR4511-201ENST00000582784 87 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 AC104984.5-201ENST00000586878 94 ntBASIC1.79□□□□□ -2.12
CCDC39Q9UFE4 SNORD1A-201ENST00000364968 72 ntBASIC1.78□□□□□ -2.12
CCDC39Q9UFE4 RNU6-604P-201ENST00000390917 100 ntBASIC1.78□□□□□ -2.12
CCDC39Q9UFE4 AC079140.2-201ENST00000506193 142 ntBASIC1.78□□□□□ -2.12
CCDC39Q9UFE4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.78□□□□□ -2.12
CCDC39Q9UFE4 AC103706.3-201ENST00000636297 85 ntBASIC1.78□□□□□ -2.12
CCDC39Q9UFE4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.77□□□□□ -2.13
CCDC39Q9UFE4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC39Q9UFE4 MIR125B2-201ENST00000385128 89 ntBASIC1.76□□□□□ -2.13
CCDC39Q9UFE4 BX248123.2-201ENST00000606318 124 ntBASIC1.76□□□□□ -2.13
CCDC39Q9UFE4 MIR4773-1-201ENST00000637203 78 ntBASIC1.76□□□□□ -2.13
CCDC39Q9UFE4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC39Q9UFE4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 RNA5SP245-201ENST00000364239 121 ntBASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 Y_RNA.258-201ENST00000364613 105 ntBASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 RNU6-934P-201ENST00000365154 107 ntBASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 MIR7974-201ENST00000615835 79 ntBASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CCDC39Q9UFE4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 RNU1-42P-201ENST00000364033 160 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 RNU6-382P-201ENST00000365181 106 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 AC110620.1-201ENST00000416042 228 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 RNU6-274P-201ENST00000459566 107 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 MIR3937-201ENST00000580135 106 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 AL645939.4-201ENST00000604495 135 ntBASIC1.74□□□□□ -2.13
CCDC39Q9UFE4 RNA5SP190-201ENST00000365222 118 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 RNU6-287P-201ENST00000516230 98 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 RNU6-1057P-201ENST00000517162 102 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 MIR4771-2-201ENST00000577758 74 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 MIR4771-1-201ENST00000582617 74 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 AL109933.3-201ENST00000619095 188 ntBASIC1.73□□□□□ -2.13
CCDC39Q9UFE4 MIR302D-201ENST00000362275 68 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 SNORD113.3-201ENST00000364630 78 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-669P-201ENST00000365575 107 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-535P-201ENST00000384722 107 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 MIR517C-201ENST00000385103 95 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 U3.27-201ENST00000391237 200 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 MIR1304-201ENST00000408243 91 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-141P-201ENST00000410499 105 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-752P-201ENST00000516376 102 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 RNU6-165P-201ENST00000517170 99 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 AC019176.1-201ENST00000518519 225 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 SNORD53B-201ENST00000577887 78 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 MIR3664-201ENST00000579074 99 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC39Q9UFE4 SNORA40.6-201ENST00000391153 128 ntBASIC1.71□□□□□ -2.14
CCDC39Q9UFE4 AC244098.3-201ENST00000424803 96 ntBASIC1.71□□□□□ -2.14
CCDC39Q9UFE4 AC036111.3-201ENST00000526389 112 ntBASIC1.71□□□□□ -2.14
CCDC39Q9UFE4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 MIR633-201ENST00000384821 98 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 AC244505.6-201ENST00000452829 130 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 RNU6-548P-201ENST00000517083 115 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 RNU6-902P-201ENST00000517212 91 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 AL078603.1-201ENST00000603824 313 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 AC069503.3-201ENST00000618674 145 ntBASIC1.7□□□□□ -2.14
CCDC39Q9UFE4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.69□□□□□ -2.14
CCDC39Q9UFE4 SNORD13-201ENST00000459299 104 ntBASIC1.69□□□□□ -2.14
CCDC39Q9UFE4 RNU6-982P-201ENST00000516216 102 ntBASIC1.69□□□□□ -2.14
CCDC39Q9UFE4 RNA5SP61-201ENST00000516453 100 ntBASIC1.69□□□□□ -2.14
CCDC39Q9UFE4 AC008608.1-201ENST00000603910 127 ntBASIC1.69□□□□□ -2.14
CCDC39Q9UFE4 SNORA67.6-201ENST00000391093 99 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 MIR1323-201ENST00000408090 73 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 RNU6-955P-201ENST00000410497 104 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 AC079150.2-201ENST00000443733 78 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 MIR4676-201ENST00000583078 72 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 MIR7843-201ENST00000622274 79 ntBASIC1.68□□□□□ -2.14
CCDC39Q9UFE4 SNORD115-44-201ENST00000365391 82 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 RNU6-614P-201ENST00000384369 107 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 RPS26P5-201ENST00000418544 335 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 AL691482.2-201ENST00000457453 84 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 RNU7-40P-201ENST00000516397 64 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 SNORA31.24-201ENST00000517232 57 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 U6.59-201ENST00000615686 107 ntBASIC1.67□□□□□ -2.14
CCDC39Q9UFE4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 RNU6-364P-201ENST00000384387 107 ntBASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 SNORA67.5-201ENST00000391036 107 ntBASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 SNORD75.2-201ENST00000408784 58 ntBASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 AC048334.1-201ENST00000477975 159 ntBASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC39Q9UFE4 SNORA75.2-201ENST00000391138 150 ntBASIC1.65□□□□□ -2.15
CCDC39Q9UFE4 SNORA75.3-201ENST00000391231 150 ntBASIC1.65□□□□□ -2.15
CCDC39Q9UFE4 AC106800.4-201ENST00000614905 153 ntBASIC1.65□□□□□ -2.15
CCDC39Q9UFE4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 MIR938-201ENST00000401216 83 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 205.8 ms