Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNA5SP205-201ENST00000364653 136 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 U8.6-201ENST00000364939 135 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 SNORD116-18-201ENST00000383961 92 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 MIR548D2-201ENST00000384955 97 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 MIR181B2-201ENST00000385004 89 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 MIR7111-201ENST00000619751 72 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 AP001340.1-201ENST00000624405 217 ntBASIC-0.37□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 MIR569-201ENST00000385228 96 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 MT-TG-201ENST00000387429 68 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 MIR4719-201ENST00000585233 84 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 MIR6779-201ENST00000617283 64 ntBASIC-0.38□□□□□ -2.47
CCDC54Q8NEL0 RNU6-363P-201ENST00000362895 105 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 MIR539-201ENST00000365690 78 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 RNU6-811P-201ENST00000384069 107 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 MT-TY-201ENST00000387409 66 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 AL158147.1-201ENST00000443970 75 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 RNU7-74P-201ENST00000459104 62 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 MTND5P41-201ENST00000517498 206 ntBASIC-0.39□□□□□ -2.47
CCDC54Q8NEL0 SNORD49B-201ENST00000365172 72 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 SNORD115-44-201ENST00000365391 82 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 MIR759-201ENST00000390224 91 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 MIR548G-201ENST00000408442 89 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 IGLVI-20-201ENST00000519296 130 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 AP001328.1-201ENST00000528550 176 ntBASIC-0.4□□□□□ -2.47
CCDC54Q8NEL0 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 RNA5SP257-201ENST00000363023 116 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 MIR3144-201ENST00000579460 79 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 MIR548X2-201ENST00000579776 100 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 AL590491.3-201ENST00000610731 82 ntBASIC-0.41□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 RNU6-647P-201ENST00000364243 107 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.466-201ENST00000384294 113 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 RNA5SP300-201ENST00000391197 107 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 RNA5SP136-201ENST00000410906 107 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 SPINT5P-201ENST00000448174 155 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 MIR4460-201ENST00000577862 86 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 uc_338.10-201ENST00000621872 182 ntBASIC-0.42□□□□□ -2.48
CCDC54Q8NEL0 RNU6-235P-201ENST00000362644 107 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 SNORD38.2-201ENST00000384470 69 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 RNU6-243P-201ENST00000391140 107 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 MIR3666-201ENST00000607845 111 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 AL512310.12-203ENST00000640543 90 ntBASIC-0.43□□□□□ -2.48
CCDC54Q8NEL0 SNORD38.1-201ENST00000363863 68 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 RNU6-154P-201ENST00000384306 106 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 MIR513C-201ENST00000401352 84 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 snoU13.11-201ENST00000459219 104 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 RNU6-320P-201ENST00000516511 106 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 AC007012.1-201ENST00000567192 175 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 RNU6-90P-201ENST00000606352 106 ntBASIC-0.44□□□□□ -2.48
CCDC54Q8NEL0 SNORD114-31-201ENST00000363219 75 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 MIR4696-201ENST00000581431 70 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 U7.2-201ENST00000607576 63 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.45□□□□□ -2.48
CCDC54Q8NEL0 SNORD58C-201ENST00000365223 64 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 MIR652-201ENST00000385278 98 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 SNORA49-201ENST00000386157 136 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 RNU6-426P-201ENST00000516464 97 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 RNA5SP285-201ENST00000516619 119 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 MIR4645-201ENST00000583158 77 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 AC145423.2-201ENST00000610631 239 ntBASIC-0.46□□□□□ -2.48
CCDC54Q8NEL0 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 SNORD114-11-201ENST00000363738 75 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 MIR7-2-201ENST00000384970 110 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 RNU6-75P-201ENST00000515944 104 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 AL442128.1-201ENST00000615151 90 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 FTX_2.1-201ENST00000618816 94 ntBASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.47□□□□□ -2.48
CCDC54Q8NEL0 MTND5P18-201ENST00000445624 1801 ntBASIC-0.48□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.48□□□□□ -2.49
CCDC54Q8NEL0 RNU6-409P-201ENST00000384114 104 ntBASIC-0.48□□□□□ -2.49
CCDC54Q8NEL0 MIR3613-201ENST00000579844 87 ntBASIC-0.48□□□□□ -2.49
CCDC54Q8NEL0 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 RNU6-886P-201ENST00000384319 105 ntBASIC-0.49□□□□□ -2.49
CCDC54Q8NEL0 MIR577-201ENST00000385196 96 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms