Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 Y_RNA.379-201ENST00000365653 102 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 MIR504-201ENST00000385065 83 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 RNU6-1089P-201ENST00000516473 104 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 MIR4771-2-201ENST00000577758 74 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 SNORA77B-201ENST00000578179 125 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 MIR4771-1-201ENST00000582617 74 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 AL137847.3-201ENST00000611521 109 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 MIR6766-201ENST00000622641 72 ntBASIC2.03□□□□□ -2.08
RNFT1Q5M7Z0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 SNORA2.1-201ENST00000363089 137 ntBASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-439P-201ENST00000384188 106 ntBASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 MIR617-201ENST00000385030 97 ntBASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-656P-201ENST00000516785 107 ntBASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
RNFT1Q5M7Z0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 SNORD114-1-201ENST00000362705 72 ntBASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 RNA5SP403-201ENST00000363598 108 ntBASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 RNA5SP212-201ENST00000391223 107 ntBASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 AL096840.1-201ENST00000603287 93 ntBASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.01□□□□□ -2.09
RNFT1Q5M7Z0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
RNFT1Q5M7Z0 MIR3664-201ENST00000579074 99 ntBASIC2□□□□□ -2.09
RNFT1Q5M7Z0 AL773524.1-201ENST00000614065 229 ntBASIC2□□□□□ -2.09
RNFT1Q5M7Z0 MIR6739-201ENST00000622461 75 ntBASIC2□□□□□ -2.09
RNFT1Q5M7Z0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.99□□□□□ -2.09
RNFT1Q5M7Z0 RNA5SP276-201ENST00000362580 94 ntBASIC1.99□□□□□ -2.09
RNFT1Q5M7Z0 SNORA75.1-201ENST00000391130 148 ntBASIC1.99□□□□□ -2.09
RNFT1Q5M7Z0 RPS26P5-201ENST00000418544 335 ntBASIC1.99□□□□□ -2.09
RNFT1Q5M7Z0 MIR4299-201ENST00000577899 72 ntBASIC1.99□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-54P-201ENST00000365563 107 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-364P-201ENST00000384387 107 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-520P-201ENST00000384717 104 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 MIR764-201ENST00000390811 85 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 AC067940.1-201ENST00000458411 300 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 AC036111.3-201ENST00000526389 112 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 MIR4676-201ENST00000583078 72 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 uc_338.10-201ENST00000621872 182 ntBASIC1.98□□□□□ -2.09
RNFT1Q5M7Z0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
RNFT1Q5M7Z0 RNU6-1312P-201ENST00000362425 108 ntBASIC1.97□□□□□ -2.09
RNFT1Q5M7Z0 MIR4524B-201ENST00000581569 115 ntBASIC1.97□□□□□ -2.09
RNFT1Q5M7Z0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
RNFT1Q5M7Z0 MIR938-201ENST00000401216 83 ntBASIC1.96□□□□□ -2.1
RNFT1Q5M7Z0 RNA5SP200-201ENST00000516360 103 ntBASIC1.96□□□□□ -2.1
RNFT1Q5M7Z0 AC027335.2-201ENST00000624030 375 ntBASIC1.96□□□□□ -2.1
RNFT1Q5M7Z0 MIR219B-201ENST00000637023 88 ntBASIC1.96□□□□□ -2.1
RNFT1Q5M7Z0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 SNORD115-24-201ENST00000363528 82 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 Y_RNA.250-201ENST00000364542 110 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 MIR519E-201ENST00000385075 84 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 SNORD111-201ENST00000408139 94 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 AL591806.2-201ENST00000433122 173 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 SNORD42B-201ENST00000458893 67 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 AC079804.2-201ENST00000490376 200 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 SNORA40.17-201ENST00000517256 115 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 MIR4769-201ENST00000584126 77 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 MIR8074-201ENST00000615081 81 ntBASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RNFT1Q5M7Z0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.94□□□□□ -2.1
RNFT1Q5M7Z0 RNU7-102P-201ENST00000458948 62 ntBASIC1.94□□□□□ -2.1
RNFT1Q5M7Z0 MIR548V-201ENST00000584165 80 ntBASIC1.94□□□□□ -2.1
RNFT1Q5M7Z0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 RNU6-753P-201ENST00000363926 107 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 snoU13.23-201ENST00000458863 104 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 RNU7-40P-201ENST00000516397 64 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 RNU7-161P-201ENST00000517289 62 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 MIR4713-201ENST00000582691 75 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 AL359821.1-201ENST00000605519 182 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 AC106800.4-201ENST00000614905 153 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 MIR6132-201ENST00000622083 109 ntBASIC1.93□□□□□ -2.1
RNFT1Q5M7Z0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 RNU6V-201ENST00000384105 107 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 AC025033.1-201ENST00000463883 194 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 RNU6-902P-201ENST00000517212 91 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 AC015712.3-201ENST00000559380 164 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 uc_338.16-201ENST00000621804 95 ntBASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
RNFT1Q5M7Z0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
RNFT1Q5M7Z0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
RNFT1Q5M7Z0 MIR302D-201ENST00000362275 68 ntBASIC1.91□□□□□ -2.1
RNFT1Q5M7Z0 RNU6-1162P-201ENST00000384443 104 ntBASIC1.91□□□□□ -2.1
RNFT1Q5M7Z0 SNORD113-2-201ENST00000391082 72 ntBASIC1.91□□□□□ -2.1
RNFT1Q5M7Z0 Y_RNA.32-201ENST00000362589 110 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 MIR630-201ENST00000384957 97 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 HMGN2P19-201ENST00000425149 265 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 RNU7-74P-201ENST00000459104 62 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 RNA5SP147-201ENST00000516493 109 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 SNORA31.14-201ENST00000516728 116 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 RNU6-165P-201ENST00000517170 99 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 AC018659.1-201ENST00000551083 169 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 MIR4804-201ENST00000581683 73 ntBASIC1.9□□□□□ -2.11
RNFT1Q5M7Z0 SNORD33-201ENST00000362761 85 ntBASIC1.89□□□□□ -2.11
RNFT1Q5M7Z0 RNU6-698P-201ENST00000363523 107 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 269.4 ms