Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RNY1P1-201ENST00000364372 112 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNA5SP173-201ENST00000364857 136 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNU6-497P-201ENST00000365316 104 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNU6-291P-201ENST00000384720 107 ntBASIC0.74□□□□□ -2.29
LMO4P61968 AC092628.1-201ENST00000436250 252 ntBASIC0.74□□□□□ -2.29
LMO4P61968 AC067940.1-201ENST00000458411 300 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNU7-56P-201ENST00000458744 62 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNU7-85P-201ENST00000458851 63 ntBASIC0.74□□□□□ -2.29
LMO4P61968 snoU13.11-201ENST00000459219 104 ntBASIC0.74□□□□□ -2.29
LMO4P61968 AC022137.1-201ENST00000483735 151 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.74□□□□□ -2.29
LMO4P61968 CYP3A137P-201ENST00000562436 69 ntBASIC0.74□□□□□ -2.29
LMO4P61968 MIR548H5-201ENST00000580314 60 ntBASIC0.74□□□□□ -2.29
LMO4P61968 AC103810.9-201ENST00000606688 112 ntBASIC0.74□□□□□ -2.29
LMO4P61968 IGLL4P-201ENST00000614590 133 ntBASIC0.74□□□□□ -2.29
LMO4P61968 RNA5SP245-201ENST00000364239 121 ntBASIC0.73□□□□□ -2.29
LMO4P61968 SNORD115-27-201ENST00000364430 82 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-1335P-201ENST00000365426 107 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-1152P-201ENST00000384576 107 ntBASIC0.73□□□□□ -2.29
LMO4P61968 MIR520F-201ENST00000384824 87 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-1254P-201ENST00000391266 104 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-519P-201ENST00000410590 108 ntBASIC0.73□□□□□ -2.29
LMO4P61968 FABP5P4-201ENST00000437203 171 ntBASIC0.73□□□□□ -2.29
LMO4P61968 AL161932.1-201ENST00000437408 146 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU7-195P-201ENST00000458793 62 ntBASIC0.73□□□□□ -2.29
LMO4P61968 Y_RNA.648-201ENST00000459455 110 ntBASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-448P-201ENST00000517052 107 ntBASIC0.73□□□□□ -2.29
LMO4P61968 MIR4698-201ENST00000577795 80 ntBASIC0.73□□□□□ -2.29
LMO4P61968 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.73□□□□□ -2.29
LMO4P61968 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
LMO4P61968 RNU6-633P-201ENST00000362612 103 ntBASIC0.72□□□□□ -2.29
LMO4P61968 RNU6-509P-201ENST00000363519 107 ntBASIC0.72□□□□□ -2.29
LMO4P61968 RNU6-535P-201ENST00000384722 107 ntBASIC0.72□□□□□ -2.29
LMO4P61968 MIR635-201ENST00000384830 98 ntBASIC0.72□□□□□ -2.29
LMO4P61968 MIR519A1-201ENST00000385257 85 ntBASIC0.72□□□□□ -2.29
LMO4P61968 RNU1-119P-201ENST00000391122 165 ntBASIC0.72□□□□□ -2.29
LMO4P61968 RNU6-243P-201ENST00000391140 107 ntBASIC0.72□□□□□ -2.29
LMO4P61968 SNORD4B-201ENST00000459083 72 ntBASIC0.72□□□□□ -2.29
LMO4P61968 AP003327.1-201ENST00000529684 127 ntBASIC0.72□□□□□ -2.29
LMO4P61968 MIR5588-201ENST00000581890 63 ntBASIC0.72□□□□□ -2.29
LMO4P61968 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.72□□□□□ -2.29
LMO4P61968 RNU7-10P-201ENST00000607194 63 ntBASIC0.72□□□□□ -2.29
LMO4P61968 Y_RNA.283-201ENST00000364798 112 ntBASIC0.71□□□□□ -2.3
LMO4P61968 RNU6-573P-201ENST00000383938 106 ntBASIC0.71□□□□□ -2.3
LMO4P61968 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
LMO4P61968 AC097635.1-201ENST00000450678 155 ntBASIC0.71□□□□□ -2.3
LMO4P61968 RNU6-75P-201ENST00000515944 104 ntBASIC0.71□□□□□ -2.3
LMO4P61968 MIR6515-201ENST00000619843 57 ntBASIC0.71□□□□□ -2.3
LMO4P61968 MIR548BB-201ENST00000626714 66 ntBASIC0.71□□□□□ -2.3
LMO4P61968 Y_RNA.32-201ENST00000362589 110 ntBASIC0.7□□□□□ -2.3
LMO4P61968 RNU6-1260P-201ENST00000362944 107 ntBASIC0.7□□□□□ -2.3
LMO4P61968 RNU6-957P-201ENST00000363652 99 ntBASIC0.7□□□□□ -2.3
LMO4P61968 RNU6-979P-201ENST00000383896 107 ntBASIC0.7□□□□□ -2.3
LMO4P61968 MIR599-201ENST00000385069 95 ntBASIC0.7□□□□□ -2.3
LMO4P61968 MIR520H-201ENST00000385126 88 ntBASIC0.7□□□□□ -2.3
LMO4P61968 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
LMO4P61968 SNORD89-201ENST00000390981 114 ntBASIC0.7□□□□□ -2.3
LMO4P61968 RNU6-466P-201ENST00000391224 103 ntBASIC0.7□□□□□ -2.3
LMO4P61968 Y_RNA.611-201ENST00000410682 108 ntBASIC0.7□□□□□ -2.3
LMO4P61968 Y_RNA.809-201ENST00000516058 95 ntBASIC0.7□□□□□ -2.3
LMO4P61968 AC138907.6-201ENST00000568401 126 ntBASIC0.7□□□□□ -2.3
LMO4P61968 AC138869.1-201ENST00000568623 124 ntBASIC0.7□□□□□ -2.3
LMO4P61968 MIR5000-201ENST00000577717 103 ntBASIC0.7□□□□□ -2.3
LMO4P61968 MIR1245B-201ENST00000636115 69 ntBASIC0.7□□□□□ -2.3
LMO4P61968 RNU4-32P-201ENST00000363404 141 ntBASIC0.69□□□□□ -2.3
LMO4P61968 ACA64.5-201ENST00000516207 127 ntBASIC0.69□□□□□ -2.3
LMO4P61968 RNU6-1110P-201ENST00000516462 101 ntBASIC0.69□□□□□ -2.3
LMO4P61968 AC006160.2-201ENST00000637708 154 ntBASIC0.69□□□□□ -2.3
LMO4P61968 RNU6-1276P-201ENST00000365372 104 ntBASIC0.68□□□□□ -2.3
LMO4P61968 RNU6-524P-201ENST00000384270 107 ntBASIC0.68□□□□□ -2.3
LMO4P61968 RNU6-242P-201ENST00000384359 107 ntBASIC0.68□□□□□ -2.3
LMO4P61968 MIR519C-201ENST00000385053 87 ntBASIC0.68□□□□□ -2.3
LMO4P61968 SNORD105-201ENST00000386910 85 ntBASIC0.68□□□□□ -2.3
LMO4P61968 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.68□□□□□ -2.3
LMO4P61968 AC244505.6-201ENST00000452829 130 ntBASIC0.68□□□□□ -2.3
LMO4P61968 RNU6-65P-201ENST00000516332 98 ntBASIC0.68□□□□□ -2.3
LMO4P61968 SNORA31.14-201ENST00000516728 116 ntBASIC0.68□□□□□ -2.3
LMO4P61968 MIR4536-1-201ENST00000583537 88 ntBASIC0.68□□□□□ -2.3
LMO4P61968 AL136317.1-201ENST00000612653 226 ntBASIC0.68□□□□□ -2.3
LMO4P61968 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.68□□□□□ -2.3
LMO4P61968 TRDV1-202ENST00000621643 102 ntBASIC0.68□□□□□ -2.3
LMO4P61968 uc_338.16-201ENST00000621804 95 ntBASIC0.68□□□□□ -2.3
LMO4P61968 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.68□□□□□ -2.3
LMO4P61968 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.68□□□□□ -2.3
LMO4P61968 RNU6-132P-201ENST00000383863 107 ntBASIC0.67□□□□□ -2.3
LMO4P61968 U7.7-201ENST00000459276 60 ntBASIC0.67□□□□□ -2.3
LMO4P61968 RNU7-171P-201ENST00000459581 62 ntBASIC0.67□□□□□ -2.3
LMO4P61968 RNU6-1265P-201ENST00000516342 103 ntBASIC0.67□□□□□ -2.3
LMO4P61968 RNA5SP255-201ENST00000516370 107 ntBASIC0.67□□□□□ -2.3
LMO4P61968 RNU7-153P-201ENST00000516455 62 ntBASIC0.67□□□□□ -2.3
LMO4P61968 Y_RNA.219-201ENST00000364232 113 ntBASIC0.66□□□□□ -2.3
LMO4P61968 RNU6-1187P-201ENST00000364771 110 ntBASIC0.66□□□□□ -2.3
LMO4P61968 Y_RNA.426-201ENST00000384068 113 ntBASIC0.66□□□□□ -2.3
LMO4P61968 RNU6-811P-201ENST00000384069 107 ntBASIC0.66□□□□□ -2.3
LMO4P61968 RNA5SP292-201ENST00000390974 118 ntBASIC0.66□□□□□ -2.3
LMO4P61968 AC002350.1-201ENST00000490759 375 ntBASIC0.66□□□□□ -2.3
LMO4P61968 PSMC1P5-201ENST00000512850 177 ntBASIC0.66□□□□□ -2.3
LMO4P61968 RNA5SP436-201ENST00000516020 115 ntBASIC0.66□□□□□ -2.3
LMO4P61968 RNU6-351P-201ENST00000516097 100 ntBASIC0.66□□□□□ -2.3
LMO4P61968 MIR3064-201ENST00000581130 66 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms