Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU7-107P-201ENST00000459121 61 ntBASIC0.22□□□□□ -2.37
CTCFP49711 RNU6-848P-201ENST00000515948 107 ntBASIC0.22□□□□□ -2.37
CTCFP49711 RNU6-617P-201ENST00000516147 107 ntBASIC0.22□□□□□ -2.37
CTCFP49711 RNU6-473P-201ENST00000516164 107 ntBASIC0.22□□□□□ -2.37
CTCFP49711 RNU6-1049P-201ENST00000516414 107 ntBASIC0.22□□□□□ -2.37
CTCFP49711 Y_RNA.346-201ENST00000365385 112 ntBASIC0.21□□□□□ -2.38
CTCFP49711 SNORD38.2-201ENST00000384470 69 ntBASIC0.21□□□□□ -2.38
CTCFP49711 SNORD41.1-201ENST00000391000 69 ntBASIC0.21□□□□□ -2.38
CTCFP49711 Y_RNA.809-201ENST00000516058 95 ntBASIC0.21□□□□□ -2.38
CTCFP49711 MIR4315-1-201ENST00000636800 73 ntBASIC0.21□□□□□ -2.38
CTCFP49711 MIR4315-2-201ENST00000640925 73 ntBASIC0.21□□□□□ -2.38
CTCFP49711 AL157777.2-201ENST00000258070 137 ntBASIC0.2□□□□□ -2.38
CTCFP49711 Y_RNA.35-201ENST00000362601 101 ntBASIC0.2□□□□□ -2.38
CTCFP49711 Y_RNA.342-201ENST00000365352 113 ntBASIC0.2□□□□□ -2.38
CTCFP49711 MIR548L-201ENST00000408303 86 ntBASIC0.2□□□□□ -2.38
CTCFP49711 RNU7-106P-201ENST00000459514 67 ntBASIC0.2□□□□□ -2.38
CTCFP49711 RNU6-1260P-201ENST00000362944 107 ntBASIC0.19□□□□□ -2.38
CTCFP49711 Y_RNA.362-201ENST00000365518 110 ntBASIC0.19□□□□□ -2.38
CTCFP49711 Y_RNA.525-201ENST00000384570 113 ntBASIC0.19□□□□□ -2.38
CTCFP49711 SNX3P1X-201ENST00000414887 175 ntBASIC0.19□□□□□ -2.38
CTCFP49711 SNORD57-201ENST00000448188 72 ntBASIC0.19□□□□□ -2.38
CTCFP49711 RNU6-1018P-201ENST00000516577 106 ntBASIC0.19□□□□□ -2.38
CTCFP49711 Y_RNA.703-201ENST00000516846 111 ntBASIC0.19□□□□□ -2.38
CTCFP49711 Y_RNA.247-201ENST00000364500 92 ntBASIC0.18□□□□□ -2.38
CTCFP49711 Y_RNA.507-201ENST00000384500 99 ntBASIC0.18□□□□□ -2.38
CTCFP49711 MIR3133-201ENST00000583157 78 ntBASIC0.18□□□□□ -2.38
CTCFP49711 AL512310.12-203ENST00000640543 90 ntBASIC0.18□□□□□ -2.38
CTCFP49711 SNORD50.2-201ENST00000365465 70 ntBASIC0.17□□□□□ -2.38
CTCFP49711 RNU6-409P-201ENST00000384114 104 ntBASIC0.17□□□□□ -2.38
CTCFP49711 MIR760-201ENST00000390220 80 ntBASIC0.17□□□□□ -2.38
CTCFP49711 MTND5P40-201ENST00000559945 246 ntBASIC0.17□□□□□ -2.38
CTCFP49711 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.17□□□□□ -2.38
CTCFP49711 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.16□□□□□ -2.38
CTCFP49711 Y_RNA.155-201ENST00000363632 101 ntBASIC0.16□□□□□ -2.38
CTCFP49711 SNORD38.1-201ENST00000363863 68 ntBASIC0.16□□□□□ -2.38
CTCFP49711 RNU6-1062P-201ENST00000383908 107 ntBASIC0.16□□□□□ -2.38
CTCFP49711 RNU6-80P-201ENST00000384195 107 ntBASIC0.16□□□□□ -2.38
CTCFP49711 MIR516A2-201ENST00000384888 90 ntBASIC0.16□□□□□ -2.38
CTCFP49711 MIR516A1-201ENST00000385033 90 ntBASIC0.16□□□□□ -2.38
CTCFP49711 RNU6-816P-201ENST00000390914 107 ntBASIC0.16□□□□□ -2.38
CTCFP49711 RNU6-1268P-201ENST00000391214 107 ntBASIC0.16□□□□□ -2.38
CTCFP49711 RNU6-1239P-201ENST00000391310 107 ntBASIC0.16□□□□□ -2.38
CTCFP49711 Y_RNA.712-201ENST00000517011 92 ntBASIC0.16□□□□□ -2.38
CTCFP49711 AL162726.3-218ENST00000636401 95 ntBASIC0.16□□□□□ -2.38
CTCFP49711 MIR3914-2-201ENST00000637339 95 ntBASIC0.16□□□□□ -2.38
CTCFP49711 MIR101-1-201ENST00000362265 75 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-774P-201ENST00000363238 107 ntBASIC0.15□□□□□ -2.39
CTCFP49711 Y_RNA.218-201ENST00000364218 104 ntBASIC0.15□□□□□ -2.39
CTCFP49711 Y_RNA.323-201ENST00000365157 109 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-1201P-201ENST00000384227 107 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-524P-201ENST00000384270 107 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-269P-201ENST00000391077 97 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-1232P-201ENST00000516299 86 ntBASIC0.15□□□□□ -2.39
CTCFP49711 RNU6-1265P-201ENST00000516342 103 ntBASIC0.15□□□□□ -2.39
CTCFP49711 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.15□□□□□ -2.39
CTCFP49711 SNORA42.1-201ENST00000363515 137 ntBASIC0.14□□□□□ -2.39
CTCFP49711 RNA5SP128-201ENST00000365305 116 ntBASIC0.14□□□□□ -2.39
CTCFP49711 RNU6-746P-201ENST00000384112 109 ntBASIC0.14□□□□□ -2.39
CTCFP49711 MIR548G-201ENST00000408442 89 ntBASIC0.14□□□□□ -2.39
CTCFP49711 SPINT5P-201ENST00000448174 155 ntBASIC0.14□□□□□ -2.39
CTCFP49711 RPL39P34-201ENST00000477141 156 ntBASIC0.14□□□□□ -2.39
CTCFP49711 MIR4679-2-201ENST00000578358 77 ntBASIC0.14□□□□□ -2.39
CTCFP49711 MIR3920-201ENST00000581751 86 ntBASIC0.14□□□□□ -2.39
CTCFP49711 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.14□□□□□ -2.39
CTCFP49711 SNORA70.25-201ENST00000612741 95 ntBASIC0.14□□□□□ -2.39
CTCFP49711 AL035470.1-201ENST00000622571 220 ntBASIC0.14□□□□□ -2.39
CTCFP49711 RNU6V-201ENST00000384105 107 ntBASIC0.13□□□□□ -2.39
CTCFP49711 RNU6-127P-201ENST00000390897 107 ntBASIC0.13□□□□□ -2.39
CTCFP49711 RNU6-659P-201ENST00000516454 104 ntBASIC0.13□□□□□ -2.39
CTCFP49711 Y_RNA.173-201ENST00000363776 113 ntBASIC0.12□□□□□ -2.39
CTCFP49711 RNU6-46P-201ENST00000383860 107 ntBASIC0.12□□□□□ -2.39
CTCFP49711 RPS29P8-201ENST00000445109 171 ntBASIC0.12□□□□□ -2.39
CTCFP49711 RNU7-129P-201ENST00000516128 62 ntBASIC0.12□□□□□ -2.39
CTCFP49711 RNU7-13P-201ENST00000516413 62 ntBASIC0.12□□□□□ -2.39
CTCFP49711 RNU6-90P-201ENST00000606352 106 ntBASIC0.12□□□□□ -2.39
CTCFP49711 AL442128.1-201ENST00000615151 90 ntBASIC0.12□□□□□ -2.39
CTCFP49711 Y_RNA.71-201ENST00000362892 104 ntBASIC0.11□□□□□ -2.39
CTCFP49711 RNU6-704P-201ENST00000364162 103 ntBASIC0.11□□□□□ -2.39
CTCFP49711 SNORD49B-201ENST00000365172 72 ntBASIC0.11□□□□□ -2.39
CTCFP49711 RNU6-1254P-201ENST00000391266 104 ntBASIC0.11□□□□□ -2.39
CTCFP49711 Y_RNA.649-201ENST00000459077 103 ntBASIC0.11□□□□□ -2.39
CTCFP49711 AC007012.1-201ENST00000567192 175 ntBASIC0.11□□□□□ -2.39
CTCFP49711 MIR5706-201ENST00000579841 80 ntBASIC0.11□□□□□ -2.39
CTCFP49711 AC073869.9-201ENST00000641610 120 ntBASIC0.11□□□□□ -2.39
CTCFP49711 Y_RNA.57-201ENST00000362806 113 ntBASIC0.1□□□□□ -2.39
CTCFP49711 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
CTCFP49711 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.1□□□□□ -2.39
CTCFP49711 SNORD33.1-201ENST00000516213 88 ntBASIC0.1□□□□□ -2.39
CTCFP49711 uc_338.28-201ENST00000612082 187 ntBASIC0.1□□□□□ -2.39
CTCFP49711 SNORD36A-201ENST00000362874 73 ntBASIC0.09□□□□□ -2.4
CTCFP49711 Y_RNA.309-201ENST00000365046 111 ntBASIC0.09□□□□□ -2.4
CTCFP49711 RNU6-302P-201ENST00000365249 107 ntBASIC0.09□□□□□ -2.4
CTCFP49711 Y_RNA.377-201ENST00000365644 108 ntBASIC0.09□□□□□ -2.4
CTCFP49711 MIR501-201ENST00000390204 84 ntBASIC0.09□□□□□ -2.4
CTCFP49711 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.09□□□□□ -2.4
CTCFP49711 MIR499B-201ENST00000636498 73 ntBASIC0.09□□□□□ -2.4
CTCFP49711 RNA5SP214-201ENST00000363378 118 ntBASIC0.08□□□□□ -2.4
CTCFP49711 SNORD114-9-201ENST00000364370 72 ntBASIC0.08□□□□□ -2.4
CTCFP49711 MIR4645-201ENST00000583158 77 ntBASIC0.08□□□□□ -2.4
CTCFP49711 AC104408.1-201ENST00000605241 170 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 195 ms