Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
HOXD9P28356 Y_RNA.174-201ENST00000363781 105 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 RNU6-497P-201ENST00000365316 104 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 RNU6-820P-201ENST00000384273 107 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 MIR520H-201ENST00000385126 88 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 Y_RNA.609-201ENST00000410669 89 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 Y_RNA.620-201ENST00000411009 88 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 AC244505.6-201ENST00000452829 130 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 RNU7-195P-201ENST00000458793 62 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 SNORD4B-201ENST00000459083 72 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 Y_RNA.809-201ENST00000516058 95 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 RNU6-762P-201ENST00000517107 102 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 MIR4698-201ENST00000577795 80 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.91□□□□□ -2.26
HOXD9P28356 MIR6788-201ENST00000618842 66 ntBASIC0.91□□□□□ -2.26
HOXD9P28356 RNA5SP245-201ENST00000364239 121 ntBASIC0.9□□□□□ -2.27
HOXD9P28356 MIR548J-201ENST00000408833 112 ntBASIC0.9□□□□□ -2.27
HOXD9P28356 RNU7-85P-201ENST00000458851 63 ntBASIC0.9□□□□□ -2.27
HOXD9P28356 RNA5SP255-201ENST00000516370 107 ntBASIC0.9□□□□□ -2.27
HOXD9P28356 RNU6-633P-201ENST00000362612 103 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 RNU6-519P-201ENST00000410590 108 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 RNU6-402P-201ENST00000410678 103 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 AC002350.1-201ENST00000490759 375 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 SNORA72.7-201ENST00000516349 94 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 MIR151B-201ENST00000584249 96 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 AL078603.1-201ENST00000603824 313 ntBASIC0.89□□□□□ -2.27
HOXD9P28356 RNY1P4-201ENST00000384595 115 ntBASIC0.88□□□□□ -2.27
HOXD9P28356 RNY4P29-201ENST00000410801 97 ntBASIC0.88□□□□□ -2.27
HOXD9P28356 snoU13.11-201ENST00000459219 104 ntBASIC0.88□□□□□ -2.27
HOXD9P28356 SNORA31.14-201ENST00000516728 116 ntBASIC0.88□□□□□ -2.27
HOXD9P28356 AC062037.1-201ENST00000605302 128 ntBASIC0.88□□□□□ -2.27
HOXD9P28356 Y_RNA.32-201ENST00000362589 110 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 Y_RNA.283-201ENST00000364798 112 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 MIR599-201ENST00000385069 95 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 RNU6-75P-201ENST00000515944 104 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 RN7SKP12-201ENST00000516275 143 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 RNU6-267P-201ENST00000516714 103 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.87□□□□□ -2.27
HOXD9P28356 IGLL4P-201ENST00000614590 133 ntBASIC0.87□□□□□ -2.27
HOXD9P28356 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.87□□□□□ -2.27
HOXD9P28356 RNU6-509P-201ENST00000363519 107 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 RNU6-957P-201ENST00000363652 99 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 RNY1P1-201ENST00000364372 112 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 RNU6-1152P-201ENST00000384576 107 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 MIR573-201ENST00000384964 99 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 SNORA26.2-201ENST00000390922 122 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 RNU6-466P-201ENST00000391224 103 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 RNA5SP220-201ENST00000516298 104 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 MIR4536-1-201ENST00000583537 88 ntBASIC0.86□□□□□ -2.27
HOXD9P28356 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.86□□□□□ -2.27
HOXD9P28356 Y_RNA.118-201ENST00000363300 101 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 RNA5SP117-201ENST00000365294 118 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 RNU6-1335P-201ENST00000365426 107 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
HOXD9P28356 Y_RNA.388-201ENST00000383919 113 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 snoU13.18-201ENST00000459483 104 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 RNU6-1265P-201ENST00000516342 103 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 RNU6-135P-201ENST00000516769 101 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 CYP3A137P-201ENST00000562436 69 ntBASIC0.85□□□□□ -2.27
HOXD9P28356 MIR494-201ENST00000349529 81 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 RNU6-524P-201ENST00000384270 107 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 RNU6-65P-201ENST00000516332 98 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 RNU6-1223P-201ENST00000517124 104 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 MTRNR2L2-201ENST00000604882 87 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 AC022709.1-201ENST00000615967 87 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 TRDV1-202ENST00000621643 102 ntBASIC0.84□□□□□ -2.27
HOXD9P28356 RNU6-42P-201ENST00000384165 107 ntBASIC0.83□□□□□ -2.28
HOXD9P28356 MIR608-201ENST00000384820 100 ntBASIC0.83□□□□□ -2.28
HOXD9P28356 MIR6734-201ENST00000621166 68 ntBASIC0.83□□□□□ -2.28
HOXD9P28356 RNA5SP403-201ENST00000363598 108 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 SNORD115-27-201ENST00000364430 82 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 RNU6-979P-201ENST00000383896 107 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR489-201ENST00000384923 84 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR519C-201ENST00000385053 87 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
HOXD9P28356 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR1236-201ENST00000408340 102 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 RNU6-351P-201ENST00000516097 100 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR3612-201ENST00000579753 87 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR7111-201ENST00000619751 72 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 MIR548BB-201ENST00000626714 66 ntBASIC0.82□□□□□ -2.28
HOXD9P28356 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
HOXD9P28356 SNORD99-201ENST00000408612 74 ntBASIC0.81□□□□□ -2.28
HOXD9P28356 AL606490.4-201ENST00000423117 127 ntBASIC0.81□□□□□ -2.28
HOXD9P28356 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.81□□□□□ -2.28
HOXD9P28356 AC022137.1-201ENST00000483735 151 ntBASIC0.81□□□□□ -2.28
HOXD9P28356 MIR5588-201ENST00000581890 63 ntBASIC0.81□□□□□ -2.28
HOXD9P28356 SNORD115-24-201ENST00000363528 82 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 Y_RNA.221-201ENST00000364248 96 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 MIR644A-201ENST00000385262 94 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 AC244098.3-201ENST00000424803 96 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 RNU7-161P-201ENST00000517289 62 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.8□□□□□ -2.28
HOXD9P28356 MIR4696-201ENST00000581431 70 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 189.7 ms