Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 TRDV1-202ENST00000621643 102 ntBASIC1.26□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU1-124P-201ENST00000363861 145 ntBASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORA25.8-201ENST00000364831 128 ntBASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-811P-201ENST00000384069 107 ntBASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORD78.1-201ENST00000390866 65 ntBASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 AC093729.1-201ENST00000513074 128 ntBASIC1.25□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORD115-37-201ENST00000363768 82 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-1335P-201ENST00000365426 107 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-132P-201ENST00000383863 107 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.508-201ENST00000384502 114 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 AC002350.1-201ENST00000490759 375 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR6078-201ENST00000611069 100 ntBASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.174-201ENST00000363781 105 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-787P-201ENST00000384032 107 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-1124P-201ENST00000384169 107 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNA5SP292-201ENST00000390974 118 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-321P-201ENST00000410912 106 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR4666B-201ENST00000578142 81 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR3064-201ENST00000581130 66 ntBASIC1.23□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIRLET7F1-201ENST00000362202 87 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 RNU6-228P-201ENST00000362700 106 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.221-201ENST00000364248 96 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 SNORD114-24-201ENST00000365029 72 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.607-201ENST00000410597 98 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 TRMT112P2-201ENST00000512910 132 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 MIR3202-2-201ENST00000635980 79 ntBASIC1.22□□□□□ -2.21
NPHP3-ACAD11A0A0J9YXS1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.437-201ENST00000384113 113 ntBASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR1285-1-201ENST00000408593 84 ntBASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-1265P-201ENST00000516342 103 ntBASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 AC104996.3-201ENST00000590718 94 ntBASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 U6.100-201ENST00000636230 99 ntBASIC1.21□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR518E-201ENST00000385252 88 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR618-201ENST00000385287 98 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR548U-201ENST00000390728 81 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-1275P-201ENST00000391087 107 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNA5SP255-201ENST00000516370 107 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORA18.5-201ENST00000516616 101 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 AC140658.3-201ENST00000567603 271 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORD114-21-201ENST00000606412 72 ntBASIC1.2□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-392P-201ENST00000364926 101 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNA5SP117-201ENST00000365294 118 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.491-201ENST00000384417 107 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-1053P-201ENST00000515930 101 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORA25.13-201ENST00000516395 103 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR4796-201ENST00000580742 81 ntBASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.19□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORD115-24-201ENST00000363528 82 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.313-201ENST00000365095 103 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR1255A-201ENST00000408338 113 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.685-201ENST00000516532 108 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 AC025627.3-201ENST00000582078 182 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR4295-201ENST00000585286 85 ntBASIC1.18□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-664P-201ENST00000362381 107 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORD114-27-201ENST00000363766 70 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNU6-652P-201ENST00000365488 107 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 SNORD101-201ENST00000384027 73 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR573-201ENST00000384964 99 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR644A-201ENST00000385262 94 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MIR4696-201ENST00000581431 70 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MTRNR2L2-201ENST00000604882 87 ntBASIC1.17□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.596-201ENST00000410462 109 ntBASIC1.16□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.16□□□□□ -2.22
NPHP3-ACAD11A0A0J9YXS1 RNA5SP403-201ENST00000363598 108 ntBASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.316-201ENST00000365118 111 ntBASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNA5SP225-201ENST00000410874 135 ntBASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU7-161P-201ENST00000517289 62 ntBASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR3612-201ENST00000579753 87 ntBASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.239-201ENST00000364444 113 ntBASIC1.14□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORD99-201ENST00000408612 74 ntBASIC1.13□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-469P-201ENST00000516253 101 ntBASIC1.13□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-624P-201ENST00000363411 107 ntBASIC1.12□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.12□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU7-13P-201ENST00000516413 62 ntBASIC1.12□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNA5SP395-201ENST00000516567 118 ntBASIC1.12□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU6-135P-201ENST00000516769 101 ntBASIC1.12□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 MIR96-201ENST00000362288 78 ntBASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.207-201ENST00000364142 106 ntBASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU4-38P-201ENST00000364472 129 ntBASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORD90-201ENST00000391145 111 ntBASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 RNU7-104P-201ENST00000459398 79 ntBASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.11□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORD115-44-201ENST00000365391 82 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 SNORD28-201ENST00000384706 75 ntBASIC1.1□□□□□ -2.23
NPHP3-ACAD11A0A0J9YXS1 AC244098.3-201ENST00000424803 96 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms