Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RN7SL489P-201ENST00000486185 223 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 RN7SL327P-201ENST00000488659 223 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 RNU6-656P-201ENST00000516785 107 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 MIR3162-201ENST00000581818 82 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 RN7SL853P-201ENST00000617250 223 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 SNORA31.25-201ENST00000517242 134 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 MIR548AG2-201ENST00000581228 64 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 MIR548V-201ENST00000584165 80 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 AL049779.4-201ENST00000604500 156 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 MIR548O2-201ENST00000616090 70 ntBASIC2.53□□□□□ -2
VPS9D1Q9Y2B5 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2.01
VPS9D1Q9Y2B5 RNA5SP456-201ENST00000364002 114 ntBASIC2.52□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-301P-201ENST00000384277 107 ntBASIC2.52□□□□□ -2.01
VPS9D1Q9Y2B5 SNORA2.1-201ENST00000363089 137 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 SNORD113.3-201ENST00000364630 78 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-439P-201ENST00000384188 106 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-364P-201ENST00000384387 107 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 MIR27B-201ENST00000385129 97 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 MIR5194-201ENST00000582634 120 ntBASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS9D1Q9Y2B5 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-753P-201ENST00000363926 107 ntBASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-54P-201ENST00000365563 107 ntBASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 MIR617-201ENST00000385030 97 ntBASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 RNA5SP184-201ENST00000411071 108 ntBASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 AC055731.1-201ENST00000474387 401 ntBASIC2.5□□□□□ -2.01
VPS9D1Q9Y2B5 MIR6073-201ENST00000352083 89 ntBASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 AC067940.1-201ENST00000458411 300 ntBASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 MIR3664-201ENST00000579074 99 ntBASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 uc_338.10-201ENST00000621872 182 ntBASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS9D1Q9Y2B5 SNORA6-201ENST00000384033 151 ntBASIC2.48□□□□□ -2.01
VPS9D1Q9Y2B5 MIR196B-201ENST00000384852 84 ntBASIC2.48□□□□□ -2.01
VPS9D1Q9Y2B5 SNORA77B-201ENST00000578179 125 ntBASIC2.48□□□□□ -2.01
VPS9D1Q9Y2B5 MIR6739-201ENST00000622461 75 ntBASIC2.48□□□□□ -2.01
VPS9D1Q9Y2B5 SNORD114-30-201ENST00000364448 72 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 SNORA67.3-201ENST00000384366 140 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-520P-201ENST00000384717 104 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 RNA5SP147-201ENST00000516493 109 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 RNU6-902P-201ENST00000517212 91 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 MIR3124-201ENST00000582636 67 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 MIR4676-201ENST00000583078 72 ntBASIC2.47□□□□□ -2.01
VPS9D1Q9Y2B5 RNA5SP403-201ENST00000363598 108 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 MIR630-201ENST00000384957 97 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 RNA5SP212-201ENST00000391223 107 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 RPS26P5-201ENST00000418544 335 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 RNU1-41P-201ENST00000516161 162 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 RNU1-48P-201ENST00000516400 162 ntBASIC2.46□□□□□ -2.02
VPS9D1Q9Y2B5 SNORD115-24-201ENST00000363528 82 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 SNORA67.1-201ENST00000364749 141 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 Y_RNA.330-201ENST00000365230 109 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 MIR938-201ENST00000401216 83 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 SNORD42B-201ENST00000458893 67 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 RNU7-193P-201ENST00000516723 65 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 AC036111.3-201ENST00000526389 112 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 MIR548AD-201ENST00000584780 82 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 AC027335.2-201ENST00000624030 375 ntBASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS9D1Q9Y2B5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
VPS9D1Q9Y2B5 RNU7-102P-201ENST00000458948 62 ntBASIC2.44□□□□□ -2.02
VPS9D1Q9Y2B5 AC025033.1-201ENST00000463883 194 ntBASIC2.44□□□□□ -2.02
VPS9D1Q9Y2B5 RNA5SP24-201ENST00000516478 95 ntBASIC2.44□□□□□ -2.02
VPS9D1Q9Y2B5 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS9D1Q9Y2B5 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 SNORA3A-201ENST00000364113 130 ntBASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 MIR548C-201ENST00000384815 97 ntBASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 MIR519E-201ENST00000385075 84 ntBASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 RNA5SP181-201ENST00000410246 98 ntBASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 RNA5SP320-201ENST00000516263 124 ntBASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS9D1Q9Y2B5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 RNU6V-201ENST00000384105 107 ntBASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 SNORD113-2-201ENST00000391082 72 ntBASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 RNA5SP82-201ENST00000516707 92 ntBASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 SNORA40.17-201ENST00000517256 115 ntBASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS9D1Q9Y2B5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 RNU6-990P-201ENST00000364385 104 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 RNU7-40P-201ENST00000516397 64 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 RNU7-161P-201ENST00000517289 62 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 MIR3945-201ENST00000581853 98 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 MIR6817-201ENST00000615588 66 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 MIR1291-201ENST00000627649 87 ntBASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS9D1Q9Y2B5 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
VPS9D1Q9Y2B5 RNU6-1162P-201ENST00000384443 104 ntBASIC2.4□□□□□ -2.03
VPS9D1Q9Y2B5 SNORD111-201ENST00000408139 94 ntBASIC2.4□□□□□ -2.03
VPS9D1Q9Y2B5 RNA5SP402-201ENST00000517148 110 ntBASIC2.4□□□□□ -2.03
VPS9D1Q9Y2B5 MIR8074-201ENST00000615081 81 ntBASIC2.4□□□□□ -2.03
VPS9D1Q9Y2B5 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS9D1Q9Y2B5 RNA5SP68-201ENST00000363885 119 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 245.9 ms