Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 RNA5SP63-201ENST00000391225 112 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 MIR548L-201ENST00000408303 86 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 AC244505.6-201ENST00000452829 130 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 TRAJ51-201ENST00000504127 63 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 RNU6-772P-201ENST00000516042 105 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 RNA5SP285-201ENST00000516619 119 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 MIR3133-201ENST00000583157 78 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 AL512310.12-203ENST00000640543 90 ntBASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.36□□□□□ -2.35
HCN3Q9P1Z3 RNU4-67P-201ENST00000364569 141 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 Y_RNA.346-201ENST00000365385 112 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 RNU2-59P-201ENST00000410482 191 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 AC069271.1-201ENST00000445577 156 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 MTND5P40-201ENST00000559945 246 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 MIR6828-201ENST00000636181 60 ntBASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
HCN3Q9P1Z3 AL157777.2-201ENST00000258070 137 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 AC090625.1-201ENST00000357130 210 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 RNU6-1099P-201ENST00000363533 107 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 SNORD38.2-201ENST00000384470 69 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.586-201ENST00000391146 98 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 MIR548I2-201ENST00000408348 149 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.703-201ENST00000516846 111 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 AC023932.2-201ENST00000603176 175 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 MIR6086-201ENST00000638065 55 ntBASIC0.34□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.155-201ENST00000363632 101 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.221-201ENST00000364248 96 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 MIR599-201ENST00000385069 95 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.630-201ENST00000411370 108 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 RNU7-107P-201ENST00000459121 61 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 RNU7-104P-201ENST00000459398 79 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.344-201ENST00000365381 112 ntBASIC0.32□□□□□ -2.36
HCN3Q9P1Z3 RNU6-1062P-201ENST00000383908 107 ntBASIC0.32□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.507-201ENST00000384500 99 ntBASIC0.32□□□□□ -2.36
HCN3Q9P1Z3 RNU6-170P-201ENST00000362832 104 ntBASIC0.31□□□□□ -2.36
HCN3Q9P1Z3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.31□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.423-201ENST00000384057 113 ntBASIC0.31□□□□□ -2.36
HCN3Q9P1Z3 SNORD63B-201ENST00000411005 70 ntBASIC0.31□□□□□ -2.36
HCN3Q9P1Z3 AC073261.1-201ENST00000429409 121 ntBASIC0.31□□□□□ -2.36
HCN3Q9P1Z3 RNU6-363P-201ENST00000362895 105 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU6-409P-201ENST00000384114 104 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU6-571P-201ENST00000384128 107 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.525-201ENST00000384570 113 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 AC097635.1-201ENST00000450678 155 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU7-195P-201ENST00000458793 62 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU6-863P-201ENST00000515989 104 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU6-850P-201ENST00000516934 103 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU7-161P-201ENST00000517289 62 ntBASIC0.3□□□□□ -2.36
HCN3Q9P1Z3 RNU6-187P-201ENST00000384139 106 ntBASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 SPINT5P-201ENST00000448174 155 ntBASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.809-201ENST00000516058 95 ntBASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 AC067863.3-201ENST00000624172 122 ntBASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.29□□□□□ -2.36
HCN3Q9P1Z3 RNU6-746P-201ENST00000384112 109 ntBASIC0.28□□□□□ -2.36
HCN3Q9P1Z3 RNU6-80P-201ENST00000384195 107 ntBASIC0.28□□□□□ -2.36
HCN3Q9P1Z3 RNU6-816P-201ENST00000390914 107 ntBASIC0.28□□□□□ -2.36
HCN3Q9P1Z3 RNU6-1268P-201ENST00000391214 107 ntBASIC0.28□□□□□ -2.36
HCN3Q9P1Z3 RNU6-1239P-201ENST00000391310 107 ntBASIC0.28□□□□□ -2.36
HCN3Q9P1Z3 Y_RNA.342-201ENST00000365352 113 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 Y_RNA.362-201ENST00000365518 110 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 MIR329-2-201ENST00000385029 84 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 MIR4752-201ENST00000579672 72 ntBASIC0.27□□□□□ -2.37
HCN3Q9P1Z3 RNU6-1313P-201ENST00000362622 102 ntBASIC0.26□□□□□ -2.37
HCN3Q9P1Z3 RNA5SP403-201ENST00000363598 108 ntBASIC0.26□□□□□ -2.37
HCN3Q9P1Z3 RNU6-726P-201ENST00000364680 107 ntBASIC0.26□□□□□ -2.37
HCN3Q9P1Z3 RNU6-1126P-201ENST00000384002 107 ntBASIC0.26□□□□□ -2.37
HCN3Q9P1Z3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.26□□□□□ -2.37
HCN3Q9P1Z3 RNU6-704P-201ENST00000364162 103 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 Y_RNA.649-201ENST00000459077 103 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 RNU7-106P-201ENST00000459514 67 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 RNU7-129P-201ENST00000516128 62 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 MIR6755-201ENST00000619993 66 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 AL162726.3-218ENST00000636401 95 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 MIR6759-201ENST00000638110 65 ntBASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.25□□□□□ -2.37
HCN3Q9P1Z3 Y_RNA.71-201ENST00000362892 104 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 RNU6-524P-201ENST00000384270 107 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 MIR516A2-201ENST00000384888 90 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 MIR516A1-201ENST00000385033 90 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 MIR1912-201ENST00000410389 80 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 RNU6-90P-201ENST00000606352 106 ntBASIC0.24□□□□□ -2.37
HCN3Q9P1Z3 SNORD38.1-201ENST00000363863 68 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 Y_RNA.218-201ENST00000364218 104 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 SNORD50.2-201ENST00000365465 70 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR548A1-201ENST00000385041 97 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR519A1-201ENST00000385257 85 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR548G-201ENST00000408442 89 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR1265-201ENST00000408444 86 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 RNU6-1018P-201ENST00000516577 106 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 AC069113.3-201ENST00000521019 150 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 AC007012.1-201ENST00000567192 175 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR6718-201ENST00000616153 80 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 MIR3914-2-201ENST00000637339 95 ntBASIC0.23□□□□□ -2.37
HCN3Q9P1Z3 SNORA9.1-201ENST00000362412 131 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 414.1 ms