Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-813P-201ENST00000384691 107 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-535P-201ENST00000384722 107 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.56-201ENST00000362798 112 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.57-201ENST00000362806 113 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.355-201ENST00000365462 98 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 TRAJ51-201ENST00000504127 63 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.705-201ENST00000516862 110 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 MIR4452-201ENST00000583004 71 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 AC103810.7-201ENST00000607821 91 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.32-201ENST00000362589 110 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.342-201ENST00000365352 113 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 AC092628.1-201ENST00000436250 252 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 MIR548H5-201ENST00000580314 60 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 AC025627.3-201ENST00000582078 182 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 RNA5SP245-201ENST00000364239 121 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR573-201ENST00000384964 99 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR181B2-201ENST00000385004 89 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 SNORD99-201ENST00000408612 74 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 SNORD63B-201ENST00000411005 70 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 OR2A41P-201ENST00000473586 105 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR2052-201ENST00000636055 55 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR488-201ENST00000365739 83 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR635-201ENST00000384830 98 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR516A2-201ENST00000384888 90 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR516A1-201ENST00000385033 90 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-887P-201ENST00000410660 100 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 snoU13.18-201ENST00000459483 104 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 AC002350.1-201ENST00000490759 375 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 RNU7-10P-201ENST00000607194 63 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 U7.3-201ENST00000616123 62 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 AC025521.1-201ENST00000621624 286 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 uc_338.16-201ENST00000621804 95 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.96-201ENST00000363092 109 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1125P-201ENST00000363601 107 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU4-38P-201ENST00000364472 129 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-480P-201ENST00000384332 107 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU7-106P-201ENST00000459514 67 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-162P-201ENST00000516228 103 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 SNORA31.14-201ENST00000516728 116 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1298P-201ENST00000362456 101 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.290-201ENST00000364879 114 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-972P-201ENST00000391208 107 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 RNA5SP220-201ENST00000516298 104 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MALAT1.1-201ENST00000618249 95 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MIR7111-201ENST00000619751 72 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MIR96-201ENST00000362288 78 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-42P-201ENST00000384165 107 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 MIR519A1-201ENST00000385257 85 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 AC244098.3-201ENST00000424803 96 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 RNU7-195P-201ENST00000458793 62 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 AL513043.2-201ENST00000573941 143 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.118-201ENST00000363300 101 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC138907.6-201ENST00000568401 126 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC138869.1-201ENST00000568623 124 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC011195.1-201ENST00000578177 177 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 MIR3612-201ENST00000579753 87 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AL353765.1-201ENST00000605514 183 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 SNORD36A-201ENST00000362874 73 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.174-201ENST00000363781 105 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 SNORD114-22-201ENST00000365423 72 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1254P-201ENST00000391266 104 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AC097635.1-201ENST00000450678 155 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.694-201ENST00000516677 117 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AL078603.1-201ENST00000603824 313 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 RNA5SP117-201ENST00000365294 118 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 SNORD58A-201ENST00000383875 65 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 RNY4P30-201ENST00000410216 95 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 SNORD116-10-201ENST00000363791 102 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU1-93P-201ENST00000364704 169 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-1131P-201ENST00000364955 107 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 MIR599-201ENST00000385069 95 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 AC244505.6-201ENST00000452829 130 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.809-201ENST00000516058 95 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 MIR6767-201ENST00000637302 66 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-1260P-201ENST00000362944 107 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNY1P7-201ENST00000384743 110 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 MIR644A-201ENST00000385262 94 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-243P-201ENST00000391140 107 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-49P-201ENST00000384256 107 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 RNA5SP170-201ENST00000517150 101 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.190-201ENST00000363964 101 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 MIR3973-201ENST00000579824 107 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 246.9 ms