Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR4804-201ENST00000581683 73 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 MIR3202-2-201ENST00000635980 79 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 AC006160.2-201ENST00000637708 154 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 MIR1-1-201ENST00000362147 71 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 MIR337-201ENST00000362281 93 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNA5SP327-201ENST00000362494 101 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 SNORA25-201ENST00000384384 134 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC092628.1-201ENST00000436250 252 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC067940.1-201ENST00000458411 300 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU7-195P-201ENST00000458793 62 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU7-102P-201ENST00000458948 62 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 MIR4498-201ENST00000577599 66 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 snoU13.31-201ENST00000607291 104 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU6-1124P-201ENST00000384169 107 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 MIR519A1-201ENST00000385257 85 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-955P-201ENST00000410497 104 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-1053P-201ENST00000515930 101 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-448P-201ENST00000517052 107 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 SNORA31.24-201ENST00000517232 57 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
PTCHD1Q96NR3 RNU4-32P-201ENST00000363404 141 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.283-201ENST00000364798 112 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 SNORD26-201ENST00000384147 75 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-524P-201ENST00000384270 107 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-1275P-201ENST00000391087 107 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-466P-201ENST00000391224 103 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU4-62P-201ENST00000410125 130 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU7-56P-201ENST00000458744 62 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-65P-201ENST00000516332 98 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.676-201ENST00000516393 96 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.685-201ENST00000516532 108 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 MIR4536-1-201ENST00000583537 88 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-228P-201ENST00000362700 106 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 SNORD115-37-201ENST00000363768 82 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 RNU6-535P-201ENST00000384722 107 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 RNU1-119P-201ENST00000391122 165 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR1236-201ENST00000408340 102 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR1827-201ENST00000408549 66 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AC093729.1-201ENST00000513074 128 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.809-201ENST00000516058 95 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR4666B-201ENST00000578142 81 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AC008608.1-201ENST00000603910 127 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.437-201ENST00000384113 113 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 RNU6-291P-201ENST00000384720 107 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 MIR520F-201ENST00000384824 87 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.607-201ENST00000410597 98 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 AC138907.6-201ENST00000568401 126 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 AC138869.1-201ENST00000568623 124 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-1260P-201ENST00000362944 107 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-957P-201ENST00000363652 99 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-787P-201ENST00000384032 107 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 MIR320A-201ENST00000385302 82 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU1-92P-201ENST00000517017 135 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 AL157834.3-201ENST00000615543 103 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 AC097635.1-201ENST00000450678 155 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNU6-75P-201ENST00000515944 104 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNU7-153P-201ENST00000516455 62 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 ZNF209P-201ENST00000593450 2304 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNA5SP245-201ENST00000364239 121 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 RNU6-811P-201ENST00000384069 107 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 MIR1255A-201ENST00000408338 113 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 AL359821.1-201ENST00000605519 182 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 MIR599-201ENST00000385069 95 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 RNU7-95P-201ENST00000459222 64 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 RMST_2.1-201ENST00000617263 136 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
PTCHD1Q96NR3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 SNORA25.8-201ENST00000364831 128 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 Y_RNA.313-201ENST00000365095 103 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 AP1B1P2-201ENST00000416196 106 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 TRDV1-202ENST00000621643 102 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 RNU6-652P-201ENST00000365488 107 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR19B1-201ENST00000384829 87 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 SNORD89-201ENST00000390981 114 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 RNA5SP225-201ENST00000410874 135 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AL606490.4-201ENST00000423117 127 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 FABP5P4-201ENST00000437203 171 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AC140658.3-201ENST00000567603 271 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR3064-201ENST00000581130 66 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AL136317.1-201ENST00000612653 226 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
PTCHD1Q96NR3 RNU6-132P-201ENST00000383863 107 ntBASIC1.31□□□□□ -2.2
PTCHD1Q96NR3 MIR520H-201ENST00000385126 88 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms