Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.174-201ENST00000363781 105 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNA5SP205-201ENST00000364653 136 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-409P-201ENST00000384114 104 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 MIR1912-201ENST00000410389 80 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 BX276092.1-201ENST00000427368 251 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-406P-201ENST00000516470 107 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-1006P-201ENST00000516998 103 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-789P-201ENST00000517105 102 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 AL109933.3-201ENST00000619095 188 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 AL512310.12-203ENST00000640543 90 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 Y_RNA.56-201ENST00000362798 112 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-1154P-201ENST00000391001 104 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-469P-201ENST00000516253 101 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-313P-201ENST00000516317 112 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-479P-201ENST00000516348 105 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNA5SP94-201ENST00000516917 108 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.247-201ENST00000364500 92 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.309-201ENST00000365046 111 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-1201P-201ENST00000384227 107 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNORD116-21-201ENST00000384507 92 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-880P-201ENST00000384526 107 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.46□□□□□ -2.34
HOXD4P09016 AL606753.1-201ENST00000427435 87 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNRPGP12-201ENST00000449481 213 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-1018P-201ENST00000516577 106 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 MIR548H5-201ENST00000580314 60 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.35-201ENST00000362601 101 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 Y_RNA.281-201ENST00000364774 94 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU6-1144P-201ENST00000384247 104 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 SNORA19-201ENST00000384737 128 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU2-51P-201ENST00000410708 197 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 TRAJ51-201ENST00000504127 63 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 AC068339.1-201ENST00000526965 141 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 AC243829.6-201ENST00000612652 106 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.45□□□□□ -2.34
HOXD4P09016 U8.6-201ENST00000364939 135 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-716P-201ENST00000365621 103 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-571P-201ENST00000384128 107 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 SNORD38.2-201ENST00000384470 69 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-476P-201ENST00000384726 107 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 Y_RNA.567-201ENST00000384736 106 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-1064P-201ENST00000410626 104 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-135P-201ENST00000516769 101 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 SNORA36.1-201ENST00000363424 132 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 SNORD38.1-201ENST00000363863 68 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNA5SP517-201ENST00000364724 117 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR635-201ENST00000384830 98 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR577-201ENST00000385196 96 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR548I2-201ENST00000408348 149 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR1197-201ENST00000408818 88 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC244505.6-201ENST00000452829 130 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 Y_RNA.681-201ENST00000516445 113 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNU6-850P-201ENST00000516934 103 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MTND5P40-201ENST00000559945 246 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC138869.1-201ENST00000568623 124 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR5009-201ENST00000578736 100 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNU7-10P-201ENST00000607194 63 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AL442128.1-201ENST00000615151 90 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR6129-201ENST00000616087 109 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC092634.7-201ENST00000621022 103 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 Y_RNA.49-201ENST00000362714 112 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNU6-170P-201ENST00000362832 104 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNA5SP257-201ENST00000363023 116 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 SNORD28-201ENST00000384706 75 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR548G-201ENST00000408442 89 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 SNORD63B-201ENST00000411005 70 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RN7SKP12-201ENST00000516275 143 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNA5SP47-201ENST00000517230 109 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR4694-201ENST00000578534 80 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR4639-201ENST00000584938 69 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNU6-1229P-201ENST00000364295 107 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 RNU6-1107P-201ENST00000364817 104 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 Y_RNA.323-201ENST00000365157 109 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 Y_RNA.377-201ENST00000365644 108 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SPINT5P-201ENST00000448174 155 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SNORA25.18-201ENST00000607153 114 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 AC244669.1-204ENST00000621564 178 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-834P-201ENST00000362367 110 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNY3P2-201ENST00000362918 102 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-832P-201ENST00000363319 107 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 SNORD115-24-201ENST00000363528 82 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 Y_RNA.342-201ENST00000365352 113 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-1056P-201ENST00000383996 107 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 MIR599-201ENST00000385069 95 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.4□□□□□ -2.35
HOXD4P09016 AC097635.1-201ENST00000450678 155 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms