Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 AC139453.2-201ENST00000487255 133 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 MIR514B-201ENST00000516774 80 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 RNU6-807P-201ENST00000516805 107 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 MIR3124-201ENST00000582636 67 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP3Q9Y6I4 MIR518E-201ENST00000385252 88 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
USP3Q9Y6I4 RNA5SP292-201ENST00000390974 118 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 MIR889-201ENST00000401280 79 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 AC079804.2-201ENST00000490376 200 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 RNU6-165P-201ENST00000517170 99 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 MIR4422-201ENST00000581938 83 ntBASIC2.05□□□□□ -2.08
USP3Q9Y6I4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
USP3Q9Y6I4 U8.13-201ENST00000390842 128 ntBASIC2.04□□□□□ -2.08
USP3Q9Y6I4 MIR1289-2-201ENST00000408360 111 ntBASIC2.04□□□□□ -2.08
USP3Q9Y6I4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USP3Q9Y6I4 RNA5SP182-201ENST00000516064 82 ntBASIC2.04□□□□□ -2.08
USP3Q9Y6I4 RNU1-40P-201ENST00000516816 164 ntBASIC2.04□□□□□ -2.08
USP3Q9Y6I4 RNU1-97P-201ENST00000516872 164 ntBASIC2.04□□□□□ -2.08
USP3Q9Y6I4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.04□□□□□ -2.08
USP3Q9Y6I4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP3Q9Y6I4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.03□□□□□ -2.08
USP3Q9Y6I4 RNU6-934P-201ENST00000365154 107 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 RNU6-132P-201ENST00000383863 107 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 Y_RNA.565-201ENST00000384719 101 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 SNORD111-201ENST00000408139 94 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 AC097635.1-201ENST00000450678 155 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 Y_RNA.809-201ENST00000516058 95 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 AC013244.2-201ENST00000603396 103 ntBASIC2.03□□□□□ -2.08
USP3Q9Y6I4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
USP3Q9Y6I4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
USP3Q9Y6I4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
USP3Q9Y6I4 RNU6-957P-201ENST00000363652 99 ntBASIC2.02□□□□□ -2.09
USP3Q9Y6I4 RNU6-788P-201ENST00000390967 104 ntBASIC2.02□□□□□ -2.09
USP3Q9Y6I4 RNU1-78P-201ENST00000391248 165 ntBASIC2.02□□□□□ -2.09
USP3Q9Y6I4 TRAJ51-201ENST00000504127 63 ntBASIC2.02□□□□□ -2.09
USP3Q9Y6I4 Y_RNA.13-201ENST00000362403 112 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 RNU6-161P-201ENST00000363051 106 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 MIR125B2-201ENST00000385128 89 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AL356379.1-201ENST00000414105 126 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 HMGN2P38-201ENST00000423806 265 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AC015818.7-201ENST00000428754 109 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AC092628.1-201ENST00000436250 252 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AC138907.6-201ENST00000568401 126 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AC138869.1-201ENST00000568623 124 ntBASIC2.01□□□□□ -2.09
USP3Q9Y6I4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.01□□□□□ -2.09
USP3Q9Y6I4 RNY4P3-201ENST00000365254 95 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2□□□□□ -2.09
USP3Q9Y6I4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2□□□□□ -2.09
USP3Q9Y6I4 RPS27P16-201ENST00000425758 201 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 RNU7-195P-201ENST00000458793 62 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 AC008834.1-201ENST00000511612 175 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 RNU6-1108P-201ENST00000516308 104 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 AC036111.3-201ENST00000526389 112 ntBASIC2□□□□□ -2.09
USP3Q9Y6I4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2□□□□□ -2.09
USP3Q9Y6I4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2□□□□□ -2.09
USP3Q9Y6I4 RNU6-208P-201ENST00000362431 107 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 RNU5F-1-201ENST00000362507 117 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 Y_RNA.239-201ENST00000364444 113 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 RN7SKP88-201ENST00000516847 250 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 AL096840.1-201ENST00000603287 93 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 7SK.8-201ENST00000612110 250 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 AC106800.4-201ENST00000614905 153 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 7SK.11-201ENST00000615477 250 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 MIR6715A-201ENST00000615929 79 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 TRDV1-202ENST00000621643 102 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 7SK.13-201ENST00000622040 250 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 AL161722.3-201ENST00000605789 2983 ntBASIC1.99□□□□□ -2.09
USP3Q9Y6I4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP3Q9Y6I4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP3Q9Y6I4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP3Q9Y6I4 MIRLET7F1-201ENST00000362202 87 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 RNU4-52P-201ENST00000384209 138 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 RNU6-411P-201ENST00000384451 107 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 MIR504-201ENST00000385065 83 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 MIR520H-201ENST00000385126 88 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 SNORD83.1-201ENST00000411362 77 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 AL591704.2-201ENST00000421658 181 ntBASIC1.98□□□□□ -2.09
USP3Q9Y6I4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP3Q9Y6I4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.97□□□□□ -2.09
USP3Q9Y6I4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.97□□□□□ -2.09
USP3Q9Y6I4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.96□□□□□ -2.09
USP3Q9Y6I4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.96□□□□□ -2.1
USP3Q9Y6I4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
USP3Q9Y6I4 SNORA26.9-201ENST00000391322 122 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 RPS26P5-201ENST00000418544 335 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 HMGN2P19-201ENST00000425149 265 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 AC048334.1-201ENST00000477975 159 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 SNORA31.2-201ENST00000516019 134 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 RNU6-871P-201ENST00000516122 100 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 RNU6-295P-201ENST00000516901 104 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 RNU6-303P-201ENST00000517091 106 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 MIR4771-2-201ENST00000577758 74 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 MIR4771-1-201ENST00000582617 74 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 MIR6845-201ENST00000613182 61 ntBASIC1.96□□□□□ -2.1
USP3Q9Y6I4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 1476.1 ms