Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU7-106P-201ENST00000459514 67 ntBASIC2.27□□□□□ -2.05
LIMD1Q9UGP4 FGF7P7-201ENST00000514120 227 ntBASIC2.27□□□□□ -2.05
LIMD1Q9UGP4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.27□□□□□ -2.05
LIMD1Q9UGP4 AC013244.2-201ENST00000603396 103 ntBASIC2.27□□□□□ -2.05
LIMD1Q9UGP4 MIR6766-201ENST00000622641 72 ntBASIC2.27□□□□□ -2.05
LIMD1Q9UGP4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 AC073261.1-201ENST00000429409 121 ntBASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 AC048334.1-201ENST00000477975 159 ntBASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 AC036111.3-201ENST00000526389 112 ntBASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 AC104996.3-201ENST00000590718 94 ntBASIC2.26□□□□□ -2.05
LIMD1Q9UGP4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 MIRLET7G-201ENST00000362280 84 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 Y_RNA.13-201ENST00000362403 112 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 MIR125B2-201ENST00000385128 89 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 RNA5SP489-201ENST00000410986 109 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 SNORD83.1-201ENST00000411362 77 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 AL591704.2-201ENST00000421658 181 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 RNU6-75P-201ENST00000515944 104 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 SNORA31.2-201ENST00000516019 134 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 MIR6132-201ENST00000622083 109 ntBASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIMD1Q9UGP4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 Y_RNA.226-201ENST00000364337 114 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 RNU6-1053P-201ENST00000515930 101 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 RNA5SP200-201ENST00000516360 103 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 MIR3064-201ENST00000581130 66 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 AC145423.2-201ENST00000610631 239 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 AC106800.4-201ENST00000614905 153 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 MIR7111-201ENST00000619751 72 ntBASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.24□□□□□ -2.05
LIMD1Q9UGP4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 SNORA63.2-201ENST00000362603 126 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 RNU6-1260P-201ENST00000362944 107 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 Y_RNA.491-201ENST00000384417 107 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 RPS27P16-201ENST00000425758 201 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 TRAJ51-201ENST00000504127 63 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 Y_RNA.809-201ENST00000516058 95 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 SNORA18.5-201ENST00000516616 101 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 MIR514B-201ENST00000516774 80 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 MIR4498-201ENST00000577599 66 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 MIR4771-2-201ENST00000577758 74 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 MIR4771-1-201ENST00000582617 74 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 MIR6845-201ENST00000613182 61 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 U7.4-201ENST00000614961 63 ntBASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.23□□□□□ -2.05
LIMD1Q9UGP4 RNU6-686P-201ENST00000364839 107 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 MIR676-201ENST00000390702 67 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 SNORA75.2-201ENST00000391138 150 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 SNORA75.3-201ENST00000391231 150 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 MIR934-201ENST00000401241 83 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 snoU13.21-201ENST00000459368 105 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 RNU6-902P-201ENST00000517212 91 ntBASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.22□□□□□ -2.05
LIMD1Q9UGP4 SNORA80D-201ENST00000384488 135 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 MIR583-201ENST00000384846 75 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 AC092628.1-201ENST00000436250 252 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 AL450471.1-201ENST00000447509 127 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 AC097635.1-201ENST00000450678 155 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 RNU7-195P-201ENST00000458793 62 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 MIR5694-201ENST00000581190 76 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 MIR4781-201ENST00000585250 76 ntBASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
LIMD1Q9UGP4 RNU6-957P-201ENST00000363652 99 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 RNU6-478P-201ENST00000363904 110 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 Y_RNA.264-201ENST00000364665 102 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 MIR518E-201ENST00000385252 88 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 RNA5SP292-201ENST00000390974 118 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 SNORA40.18-201ENST00000391200 128 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 RPS26P5-201ENST00000418544 335 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 Y_RNA.697-201ENST00000516776 113 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 AC138907.6-201ENST00000568401 126 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 AC138869.1-201ENST00000568623 124 ntBASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LIMD1Q9UGP4 Y_RNA.42-201ENST00000362660 108 ntBASIC2.19□□□□□ -2.06
LIMD1Q9UGP4 AC108667.1-201ENST00000428618 249 ntBASIC2.19□□□□□ -2.06
LIMD1Q9UGP4 RNU7-156P-201ENST00000517214 74 ntBASIC2.19□□□□□ -2.06
LIMD1Q9UGP4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.19□□□□□ -2.06
LIMD1Q9UGP4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
LIMD1Q9UGP4 MIRLET7A1-201ENST00000362295 80 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 RNU6-132P-201ENST00000383863 107 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 MIR1287-201ENST00000408492 90 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 RNU7-90P-201ENST00000459216 62 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 RNU7-21P-201ENST00000459430 62 ntBASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.18□□□□□ -2.06
LIMD1Q9UGP4 RNU6-364P-201ENST00000384387 107 ntBASIC2.17□□□□□ -2.06
LIMD1Q9UGP4 AC104435.1-201ENST00000483483 166 ntBASIC2.17□□□□□ -2.06
LIMD1Q9UGP4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.17□□□□□ -2.06
LIMD1Q9UGP4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 SNORD77.2-201ENST00000391045 68 ntBASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 MIR938-201ENST00000401216 83 ntBASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 RNU6-448P-201ENST00000517052 107 ntBASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 MIR4676-201ENST00000583078 72 ntBASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 TRDV1-202ENST00000621643 102 ntBASIC2.16□□□□□ -2.06
LIMD1Q9UGP4 Y_RNA.239-201ENST00000364444 113 ntBASIC2.15□□□□□ -2.07
LIMD1Q9UGP4 MIR144-201ENST00000384886 86 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms