Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 Y_RNA.692-201ENST00000516627 105 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 RNU6-1212P-201ENST00000517023 104 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 DEFB131E-201ENST00000532329 154 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 MIR6718-201ENST00000616153 80 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 Y_RNA.56-201ENST00000362798 112 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 Y_RNA.119-201ENST00000363301 96 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 Y_RNA.420-201ENST00000384043 110 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 SNORA50A-201ENST00000384225 134 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 AC244505.6-201ENST00000452829 130 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 RNA5SP268-201ENST00000516828 124 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 AC090425.1-201ENST00000610007 140 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 MIR7107-201ENST00000611489 80 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 AC105081.1-201ENST00000617727 106 ntBASIC0.28□□□□□ -2.36
LIME1Q9H400 MIR103A1-201ENST00000362165 78 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 SNORA63.5-201ENST00000363548 123 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 Y_RNA.180-201ENST00000363867 113 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 Y_RNA.215-201ENST00000364204 112 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 RNA5SP245-201ENST00000364239 121 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 RNU6-429P-201ENST00000384582 108 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 RNU6-1307P-201ENST00000391012 103 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 RNU7-48P-201ENST00000458875 63 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 MTND5P41-201ENST00000517498 206 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 AP001328.1-201ENST00000528550 176 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 U7.2-201ENST00000607576 63 ntBASIC0.27□□□□□ -2.37
LIME1Q9H400 SNORD115-19-201ENST00000363098 82 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 Y_RNA.114-201ENST00000363265 113 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 SNORD115-18-201ENST00000363293 82 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 RNU6-647P-201ENST00000364243 107 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 RNU6-1229P-201ENST00000364295 107 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 SNORD115-17-201ENST00000364612 82 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 Y_RNA.448-201ENST00000384185 108 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 Y_RNA.464-201ENST00000384282 110 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 SNRPGP12-201ENST00000449481 213 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 RNU7-2P-201ENST00000516096 62 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 MIR6086-201ENST00000638065 55 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 AC091304.10-201ENST00000641554 121 ntBASIC0.26□□□□□ -2.37
LIME1Q9H400 Y_RNA.8-201ENST00000362353 102 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 Y_RNA.127-201ENST00000363386 109 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 MT-TI-201ENST00000387365 69 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 SUMO1P3-201ENST00000439961 304 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 AC087741.2-201ENST00000619415 172 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 AC244669.1-204ENST00000621564 178 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 AP001362.1-201ENST00000625165 124 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 AC021753.1-201ENST00000635724 168 ntBASIC0.25□□□□□ -2.37
LIME1Q9H400 MIR101-2-201ENST00000362195 79 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RNU6-1099P-201ENST00000363533 107 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RNU6-1126P-201ENST00000384002 107 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RNU6-616P-201ENST00000384353 107 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RNU2-59P-201ENST00000410482 191 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 AC108059.2-201ENST00000434626 151 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RNU5E-3P-201ENST00000515913 68 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 RN7SKP19-201ENST00000516016 252 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 MIR548H5-201ENST00000580314 60 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 TUG1_4.1-201ENST00000619464 181 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 MIR6759-201ENST00000638110 65 ntBASIC0.24□□□□□ -2.37
LIME1Q9H400 Y_RNA.98-201ENST00000363109 102 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 Y_RNA.170-201ENST00000363746 110 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 SNORD115-35-201ENST00000365122 82 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 RNA5SP136-201ENST00000410906 107 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 RNU7-200P-201ENST00000516105 62 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 AC138869.1-201ENST00000568623 124 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 MIR3163-201ENST00000581592 73 ntBASIC0.23□□□□□ -2.37
LIME1Q9H400 Y_RNA.328-201ENST00000365208 113 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 MIR519A1-201ENST00000385257 85 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 AL158147.1-201ENST00000443970 75 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 RNA5SP227-201ENST00000516184 113 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 RNU6-426P-201ENST00000516464 97 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 RNU7-10P-201ENST00000607194 63 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 MIR6755-201ENST00000619993 66 ntBASIC0.22□□□□□ -2.37
LIME1Q9H400 Y_RNA.198-201ENST00000364013 98 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 RNU6-848P-201ENST00000515948 107 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 RNU6-617P-201ENST00000516147 107 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 RNU6-473P-201ENST00000516164 107 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 RNU6-1049P-201ENST00000516414 107 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 MIR4636-201ENST00000582271 80 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 MIR376B-201ENST00000614515 100 ntBASIC0.21□□□□□ -2.38
LIME1Q9H400 RNA5SP403-201ENST00000363598 108 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 Y_RNA.213-201ENST00000364178 111 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 RNU6-865P-201ENST00000364772 107 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 RNY1P5-201ENST00000383890 115 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 Y_RNA.488-201ENST00000384403 102 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 MIR548I2-201ENST00000408348 149 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 AC097635.1-201ENST00000450678 155 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 MIR3671-201ENST00000580455 88 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 MIR5190-201ENST00000581537 80 ntBASIC0.2□□□□□ -2.38
LIME1Q9H400 SNORD115-24-201ENST00000363528 82 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 MIR329-2-201ENST00000385029 84 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 AC069271.1-201ENST00000445577 156 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 RNU7-161P-201ENST00000517289 62 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 AC069113.3-201ENST00000521019 150 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 RNU1-29P-201ENST00000606574 126 ntBASIC0.19□□□□□ -2.38
LIME1Q9H400 RNU6-726P-201ENST00000364680 107 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 Y_RNA.506-201ENST00000384494 102 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
LIME1Q9H400 RNU6-735P-201ENST00000410612 107 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms