Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR635-201ENST00000384830 98 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 MIR489-201ENST00000384923 84 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 AL603914.1-201ENST00000401964 204 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 MIR1302-3-201ENST00000408128 138 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 RNU7-195P-201ENST00000458793 62 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 RNA5SP484-201ENST00000458857 111 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 RNU7-165P-201ENST00000458864 60 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 RNU7-2P-201ENST00000516096 62 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 AC141557.1-201ENST00000540982 400 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 MIR5706-201ENST00000579841 80 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 MIR4743-201ENST00000584576 69 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 AC087741.2-201ENST00000619415 172 ntBASIC-0.17□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 MIR519A1-201ENST00000385257 85 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 MIR548L-201ENST00000408303 86 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 SNORD63B-201ENST00000411005 70 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 AC097635.1-201ENST00000450678 155 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 MIR548AG2-201ENST00000581228 64 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.18□□□□□ -2.44
CCDC54Q8NEL0 SNORD115-35-201ENST00000365122 82 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 MIR34C-201ENST00000384831 77 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 MTATP6P21-201ENST00000440681 189 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 RNU6-180P-201ENST00000516697 61 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 AP001362.1-201ENST00000625165 124 ntBASIC-0.19□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 SNORD114-26-201ENST00000363543 72 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 RNU6-682P-201ENST00000363843 106 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 RNA5SP163-201ENST00000410304 99 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 SNORA81.3-201ENST00000517283 198 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 NAMPTP3-201ENST00000569273 224 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 AL137067.1-201ENST00000615933 120 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 AC099654.10-201ENST00000640395 161 ntBASIC-0.2□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 RNU6-196P-201ENST00000384315 107 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 MIR1197-201ENST00000408818 88 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 AC074198.2-201ENST00000508153 258 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.21□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 SNORA32.1-201ENST00000364514 115 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 MIR106A-201ENST00000384870 81 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 MIR548I2-201ENST00000408348 149 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 RNU6-735P-201ENST00000410612 107 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 RNU6-861P-201ENST00000516745 106 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 RNA5SP330-201ENST00000517096 96 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 MIR3121-201ENST00000579680 77 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 AC072026.1-201ENST00000605023 201 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.22□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-652P-201ENST00000365488 107 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-524P-201ENST00000384270 107 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-460P-201ENST00000391158 108 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 SNORD110-201ENST00000408189 75 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU7-159P-201ENST00000459284 62 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU7-10P-201ENST00000607194 63 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 MIR1255B1-201ENST00000636325 63 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 AC073869.9-201ENST00000641610 120 ntBASIC-0.23□□□□□ -2.45
CCDC54Q8NEL0 RNU6-170P-201ENST00000362832 104 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 MIR876-201ENST00000401147 81 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 AC093423.1-201ENST00000440817 142 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 RNU6-850P-201ENST00000516934 103 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 MTND5P40-201ENST00000559945 246 ntBASIC-0.24□□□□□ -2.45
CCDC54Q8NEL0 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 SNORD115-19-201ENST00000363098 82 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 SNORD115-18-201ENST00000363293 82 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 SNORD115-17-201ENST00000364612 82 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNU4-11P-201ENST00000365287 132 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNU6V-201ENST00000384105 107 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNU6-463P-201ENST00000384340 107 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 MIR516A2-201ENST00000384888 90 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 MIR516A1-201ENST00000385033 90 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 SNORD37.2-201ENST00000391075 66 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 SNORD77B-201ENST00000391112 67 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 AL353813.1-201ENST00000440700 253 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 RNA5SP480-201ENST00000516840 109 ntBASIC-0.25□□□□□ -2.45
CCDC54Q8NEL0 AP002392.1-201ENST00000537692 208 ntBASIC-0.25□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms