Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.344-201ENST00000365381 112 ntBASIC0.99□□□□□ -2.25
SF3A1Q15459 RNU6-291P-201ENST00000384720 107 ntBASIC0.99□□□□□ -2.25
SF3A1Q15459 SNORA7.5-201ENST00000410672 110 ntBASIC0.99□□□□□ -2.25
SF3A1Q15459 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.99□□□□□ -2.25
SF3A1Q15459 MIR5000-201ENST00000577717 103 ntBASIC0.99□□□□□ -2.25
SF3A1Q15459 MIR373-201ENST00000362273 69 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 RNU4-67P-201ENST00000364569 141 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 Y_RNA.507-201ENST00000384500 99 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 SNORA19-201ENST00000384737 128 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 MIR548A3-201ENST00000385297 97 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 RNU6-1154P-201ENST00000391001 104 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 RNA5SP436-201ENST00000516020 115 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 RNU6-313P-201ENST00000516317 112 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 MIR4698-201ENST00000577795 80 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 MIR4653-201ENST00000585107 83 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 MIR376B-201ENST00000614515 100 ntBASIC0.98□□□□□ -2.25
SF3A1Q15459 Y_RNA.32-201ENST00000362589 110 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 RNA5SP325-201ENST00000363756 130 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 Y_RNA.174-201ENST00000363781 105 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 SNORD114-2-201ENST00000363953 78 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 RNA5SP205-201ENST00000364653 136 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 Y_RNA.362-201ENST00000365518 110 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 RNU6-429P-201ENST00000384582 108 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 MIR146A-201ENST00000385201 99 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 MIR140-201ENST00000385282 100 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 AL670379.3-201ENST00000605040 251 ntBASIC0.97□□□□□ -2.25
SF3A1Q15459 Y_RNA.155-201ENST00000363632 101 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 Y_RNA.353-201ENST00000365440 108 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 MIR548A1-201ENST00000385041 97 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 RNU6-679P-201ENST00000391003 106 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 RNU2-51P-201ENST00000410708 197 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 AL606490.4-201ENST00000423117 127 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.96□□□□□ -2.26
SF3A1Q15459 SNORA31.14-201ENST00000516728 116 ntBASIC0.96□□□□□ -2.26
SF3A1Q15459 HSBP1P2-201ENST00000299671 229 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 MIR34C-201ENST00000384831 77 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.95□□□□□ -2.26
SF3A1Q15459 CYP3A137P-201ENST00000562436 69 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 MIR4679-2-201ENST00000578358 77 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 U2.22-201ENST00000636441 106 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 AL512310.12-203ENST00000640543 90 ntBASIC0.95□□□□□ -2.26
SF3A1Q15459 Y_RNA.205-201ENST00000364128 113 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 RNU6-1081P-201ENST00000384537 107 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 MIR644A-201ENST00000385262 94 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 AC007012.1-201ENST00000567192 175 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 MIR3678-201ENST00000578455 94 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 uc_338.16-201ENST00000621804 95 ntBASIC0.94□□□□□ -2.26
SF3A1Q15459 RNU6-409P-201ENST00000384114 104 ntBASIC0.93□□□□□ -2.26
SF3A1Q15459 RNU6-816P-201ENST00000390914 107 ntBASIC0.93□□□□□ -2.26
SF3A1Q15459 RNU6-1268P-201ENST00000391214 107 ntBASIC0.93□□□□□ -2.26
SF3A1Q15459 RNU6-1239P-201ENST00000391310 107 ntBASIC0.93□□□□□ -2.26
SF3A1Q15459 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.93□□□□□ -2.26
SF3A1Q15459 RNU6-834P-201ENST00000362367 110 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 RNU6-363P-201ENST00000362895 105 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 SNORD38.2-201ENST00000384470 69 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
SF3A1Q15459 BX276092.1-201ENST00000427368 251 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 RPL39P34-201ENST00000477141 156 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 MIR548H5-201ENST00000580314 60 ntBASIC0.92□□□□□ -2.26
SF3A1Q15459 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SF3A1Q15459 Y_RNA.56-201ENST00000362798 112 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 SNORA63.5-201ENST00000363548 123 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 Y_RNA.360-201ENST00000365512 102 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 RN7SL793P-201ENST00000583259 296 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.91□□□□□ -2.26
SF3A1Q15459 AL590095.2-201ENST00000604136 117 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 RNU7-10P-201ENST00000607194 63 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 AL035470.1-201ENST00000622571 220 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 AL162726.3-218ENST00000636401 95 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 MIR6866-201ENST00000638146 69 ntBASIC0.91□□□□□ -2.26
SF3A1Q15459 Y_RNA.567-201ENST00000384736 106 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 MIR216A-201ENST00000385063 110 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 MIR548I2-201ENST00000408348 149 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 MIR1912-201ENST00000410389 80 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 RNU6-733P-201ENST00000410759 104 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.9□□□□□ -2.27
SF3A1Q15459 Y_RNA.85-201ENST00000363014 111 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNU6-1229P-201ENST00000364295 107 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNU6-1144P-201ENST00000384247 104 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 SNORD116-21-201ENST00000384507 92 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNY1P4-201ENST00000384595 115 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNU6-476P-201ENST00000384726 107 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNU6-1064P-201ENST00000410626 104 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 RNU6-135P-201ENST00000516769 101 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 MIR548AI-201ENST00000579940 88 ntBASIC0.89□□□□□ -2.27
SF3A1Q15459 Y_RNA.309-201ENST00000365046 111 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 RNU6-945P-201ENST00000383947 107 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 RNU6-1056P-201ENST00000383996 107 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.88□□□□□ -2.27
SF3A1Q15459 AC004941.2-201ENST00000427009 228 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 RNA5SP94-201ENST00000516917 108 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 AC092634.7-201ENST00000621022 103 ntBASIC0.88□□□□□ -2.27
SF3A1Q15459 RNU6-880P-201ENST00000384526 107 ntBASIC0.87□□□□□ -2.27
SF3A1Q15459 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.87□□□□□ -2.27
SF3A1Q15459 RNU6-412P-201ENST00000516434 106 ntBASIC0.87□□□□□ -2.27
SF3A1Q15459 MTND5P40-201ENST00000559945 246 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 182.7 ms