Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 MT-TF-201ENST00000387314 71 ntBASIC1.6□□□□□ -2.15
NKX3-2P78367 RNU1-78P-201ENST00000391248 165 ntBASIC1.6□□□□□ -2.15
NKX3-2P78367 RNA5SP102-201ENST00000516865 106 ntBASIC1.6□□□□□ -2.15
NKX3-2P78367 IGLL4P-201ENST00000614590 133 ntBASIC1.6□□□□□ -2.15
NKX3-2P78367 AC025521.1-201ENST00000621624 286 ntBASIC1.6□□□□□ -2.15
NKX3-2P78367 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
NKX3-2P78367 Y_RNA.330-201ENST00000365230 109 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 Y_RNA.363-201ENST00000365529 113 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 RNU6-675P-201ENST00000384236 104 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 RNY1P4-201ENST00000384595 115 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 RNU4-83P-201ENST00000410863 133 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 RNU6-1054P-201ENST00000411293 104 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 BX276092.1-201ENST00000427368 251 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 RN7SKP88-201ENST00000516847 250 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 AL513043.2-201ENST00000573941 143 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 MIR4668-201ENST00000582284 70 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 7SK.8-201ENST00000612110 250 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 7SK.11-201ENST00000615477 250 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 7SK.13-201ENST00000622040 250 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 MIR1245B-201ENST00000636115 69 ntBASIC1.59□□□□□ -2.15
NKX3-2P78367 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.58□□□□□ -2.16
NKX3-2P78367 SNORA75.2-201ENST00000391138 150 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 SNORA75.3-201ENST00000391231 150 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 MIR1304-201ENST00000408243 91 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 AC022137.1-201ENST00000483735 151 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 RNU1-92P-201ENST00000517017 135 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 MIR4491-201ENST00000581087 68 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 MIR3660-201ENST00000584845 100 ntBASIC1.58□□□□□ -2.16
NKX3-2P78367 Y_RNA.118-201ENST00000363300 101 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 Y_RNA.588-201ENST00000391254 102 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 SNORD93-201ENST00000408813 74 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 Y_RNA.609-201ENST00000410669 89 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 Y_RNA.620-201ENST00000411009 88 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.57□□□□□ -2.16
NKX3-2P78367 SNRPGP12-201ENST00000449481 213 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 SNORA31.2-201ENST00000516019 134 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 SNORA25.16-201ENST00000516741 121 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 AL157834.3-201ENST00000615543 103 ntBASIC1.57□□□□□ -2.16
NKX3-2P78367 AC008163.1-202ENST00000636004 2889 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.56□□□□□ -2.16
NKX3-2P78367 AC015818.7-201ENST00000428754 109 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 AC087499.7-201ENST00000441958 109 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 MIR18B-201ENST00000454574 71 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 RNU6-531P-201ENST00000516694 104 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 RNU6-850P-201ENST00000516934 103 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 MIR4422-201ENST00000581938 83 ntBASIC1.56□□□□□ -2.16
NKX3-2P78367 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.56□□□□□ -2.16
NKX3-2P78367 RNU6-1125P-201ENST00000363601 107 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 Y_RNA.191-201ENST00000363972 113 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 RNU1-36P-201ENST00000365130 165 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 RNU6-497P-201ENST00000365316 104 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 RNU6-480P-201ENST00000384332 107 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 SNORD83.1-201ENST00000411362 77 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 snoU13.18-201ENST00000459483 104 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 AC036111.3-201ENST00000526389 112 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.55□□□□□ -2.16
NKX3-2P78367 RNU6-902P-201ENST00000517212 91 ntBASIC1.54□□□□□ -2.16
NKX3-2P78367 MIR4452-201ENST00000583004 71 ntBASIC1.54□□□□□ -2.16
NKX3-2P78367 RNU6-403P-201ENST00000363163 104 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 Y_RNA.224-201ENST00000364308 111 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 SNORD113.3-201ENST00000364630 78 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 MIR320A-201ENST00000385302 82 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 RNU7-185P-201ENST00000459215 60 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 AC023934.1-201ENST00000574529 2389 ntBASIC1.53□□□□□ -2.16
NKX3-2P78367 Y_RNA.57-201ENST00000362806 113 ntBASIC1.52□□□□□ -2.17
NKX3-2P78367 SNORA72.6-201ENST00000384520 129 ntBASIC1.52□□□□□ -2.17
NKX3-2P78367 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.52□□□□□ -2.17
NKX3-2P78367 AC023827.1-201ENST00000569247 97 ntBASIC1.52□□□□□ -2.17
NKX3-2P78367 MIR8066-201ENST00000617280 78 ntBASIC1.52□□□□□ -2.17
NKX3-2P78367 RNU6-979P-201ENST00000383896 107 ntBASIC1.51□□□□□ -2.17
NKX3-2P78367 RNU6-571P-201ENST00000384128 107 ntBASIC1.51□□□□□ -2.17
NKX3-2P78367 SNORA40.6-201ENST00000391153 128 ntBASIC1.51□□□□□ -2.17
NKX3-2P78367 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
NKX3-2P78367 MIR5588-201ENST00000581890 63 ntBASIC1.51□□□□□ -2.17
NKX3-2P78367 SNORD115-27-201ENST00000364430 82 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 RNU6-934P-201ENST00000365154 107 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 RNU6-1276P-201ENST00000365372 104 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 RNU6-910P-201ENST00000390844 107 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 AP003327.1-201ENST00000529684 127 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 MIR6078-201ENST00000611069 100 ntBASIC1.5□□□□□ -2.17
NKX3-2P78367 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.5□□□□□ -2.17
NKX3-2P78367 MIR96-201ENST00000362288 78 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU6-633P-201ENST00000362612 103 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU4-58P-201ENST00000363192 141 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU6-509P-201ENST00000363519 107 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU1-93P-201ENST00000364704 169 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 SNORD114-22-201ENST00000365423 72 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 MIR1257-201ENST00000408490 117 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 Y_RNA.611-201ENST00000410682 108 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 RNU7-21P-201ENST00000459430 62 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 MIR4771-2-201ENST00000577758 74 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 MIR4771-1-201ENST00000582617 74 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 AC013244.2-201ENST00000603396 103 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 MIR548BB-201ENST00000626714 66 ntBASIC1.49□□□□□ -2.17
NKX3-2P78367 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms