Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNORD115-35-201ENST00000365122 82 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 Y_RNA.344-201ENST00000365381 112 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 SNORD100-201ENST00000408573 76 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNA5SP222-201ENST00000411039 105 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNU7-48P-201ENST00000458875 63 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 AC002350.1-201ENST00000490759 375 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNU6-765P-201ENST00000516916 99 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 AP003327.1-201ENST00000529684 127 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 MTND5P34-201ENST00000568888 325 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.56□□□□□ -2.32
HOXD4P09016 AC132825.6-201ENST00000638861 357 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNU4-58P-201ENST00000363192 141 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 Y_RNA.119-201ENST00000363301 96 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 RNY4P6-201ENST00000363667 96 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 RNY1P8-201ENST00000383970 114 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 AC092628.1-201ENST00000436250 252 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 AL365222.1-201ENST00000614661 98 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 U6.95-201ENST00000636931 70 ntBASIC0.55□□□□□ -2.32
HOXD4P09016 MIR18A-201ENST00000362310 71 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.30-201ENST00000362572 97 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 RNU6-865P-201ENST00000364772 107 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.328-201ENST00000365208 113 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.362-201ENST00000365518 110 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 RNU6-291P-201ENST00000384720 107 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 AC008267.6-201ENST00000441664 139 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.649-201ENST00000459077 103 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 RNU6-521P-201ENST00000516663 105 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.697-201ENST00000516776 113 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 MIR376B-201ENST00000614515 100 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 AC243829.3-201ENST00000622177 108 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 AL035470.1-201ENST00000622571 220 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 AP001362.1-201ENST00000625165 124 ntBASIC0.54□□□□□ -2.32
HOXD4P09016 Y_RNA.32-201ENST00000362589 110 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 Y_RNA.98-201ENST00000363109 102 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 Y_RNA.115-201ENST00000363272 98 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 RNU4-67P-201ENST00000364569 141 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 Y_RNA.353-201ENST00000365440 108 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 Y_RNA.536-201ENST00000384621 113 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 MIR34C-201ENST00000384831 77 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 RNU4-61P-201ENST00000411243 107 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 RNU6-1194P-201ENST00000516208 104 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 RNA5SP330-201ENST00000517096 96 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
HOXD4P09016 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.52□□□□□ -2.33
HOXD4P09016 SNORA36.2-201ENST00000384004 127 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 RNU6-1117P-201ENST00000384525 104 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 Y_RNA.563-201ENST00000384707 108 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 MIR548A1-201ENST00000385041 97 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 MIR548A3-201ENST00000385297 97 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 SNORA7.5-201ENST00000410672 110 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.52□□□□□ -2.33
HOXD4P09016 AC007012.1-201ENST00000567192 175 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.52□□□□□ -2.33
HOXD4P09016 AL670379.3-201ENST00000605040 251 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 uc_338.16-201ENST00000621804 95 ntBASIC0.52□□□□□ -2.33
HOXD4P09016 MIR330-201ENST00000362196 94 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNU6-363P-201ENST00000362895 105 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNA5SP117-201ENST00000365294 118 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 SNORD113-1-201ENST00000365321 69 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNU6-22P-201ENST00000384355 107 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNU6-429P-201ENST00000384582 108 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 Y_RNA.549-201ENST00000384657 102 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNU6-535P-201ENST00000384722 107 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 MIR92A1-201ENST00000385233 78 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 AL353813.1-201ENST00000440700 253 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 SNORA31.14-201ENST00000516728 116 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 MIR4500-201ENST00000579472 76 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 MIR8087-201ENST00000612745 78 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
HOXD4P09016 MIR101-2-201ENST00000362195 79 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 SNORA63.5-201ENST00000363548 123 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 Y_RNA.258-201ENST00000364613 105 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU4-45P-201ENST00000365469 141 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 Y_RNA.360-201ENST00000365512 102 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 MIR644A-201ENST00000385262 94 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU6-1168P-201ENST00000390831 104 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU6-816P-201ENST00000390914 107 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU6-679P-201ENST00000391003 106 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU6-1268P-201ENST00000391214 107 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNU6-1239P-201ENST00000391310 107 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 AC098934.3-201ENST00000430450 190 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 RNA5SP121-201ENST00000516537 101 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 MIR4679-2-201ENST00000578358 77 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 AL162726.3-218ENST00000636401 95 ntBASIC0.5□□□□□ -2.33
HOXD4P09016 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
HOXD4P09016 Y_RNA.155-201ENST00000363632 101 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 RNA5SP245-201ENST00000364239 121 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 Y_RNA.507-201ENST00000384500 99 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 MIR140-201ENST00000385282 100 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 RPL39P34-201ENST00000477141 156 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 RNU6-62P-201ENST00000516526 102 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 AC018659.1-201ENST00000551083 169 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 MIR3678-201ENST00000578455 94 ntBASIC0.49□□□□□ -2.33
HOXD4P09016 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
HOXD4P09016 RNU6-1313P-201ENST00000362622 102 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 Y_RNA.85-201ENST00000363014 111 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms