Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-65P-201ENST00000516332 98 ntBASIC2.39□□□□□ -2.03
LIMD1Q9UGP4 RNU6-531P-201ENST00000516694 104 ntBASIC2.39□□□□□ -2.03
LIMD1Q9UGP4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LIMD1Q9UGP4 RNU6-315P-201ENST00000362666 107 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 SNORD36A-201ENST00000362874 73 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 RNU7-85P-201ENST00000458851 63 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 RNA5SP402-201ENST00000517148 110 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 MIR4536-1-201ENST00000583537 88 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 MIR4712-201ENST00000583750 82 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 AL137847.3-201ENST00000611521 109 ntBASIC2.38□□□□□ -2.03
LIMD1Q9UGP4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 Y_RNA.94-201ENST00000363068 106 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 RNU6-403P-201ENST00000363163 104 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 RNU6-466P-201ENST00000391224 103 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 MIR1257-201ENST00000408490 117 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 RNA5SP95-201ENST00000410319 137 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 RNU6-1054P-201ENST00000411293 104 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 SNORA25.13-201ENST00000516395 103 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 AL512310.8-201ENST00000550183 120 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 MIR5007-201ENST00000583098 95 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 MIR219B-201ENST00000637023 88 ntBASIC2.37□□□□□ -2.03
LIMD1Q9UGP4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 MIR101-2-201ENST00000362195 79 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 MIR516A2-201ENST00000384888 90 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 MIR516A1-201ENST00000385033 90 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 snoU13.11-201ENST00000459219 104 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 AC023790.1-201ENST00000482174 347 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 SNORA25.16-201ENST00000516741 121 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 AL161722.3-201ENST00000605789 2983 ntBASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
LIMD1Q9UGP4 SNORD113.3-201ENST00000364630 78 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 MIR221-201ENST00000385135 110 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 RNU6-129P-201ENST00000391022 107 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 RNU7-185P-201ENST00000459215 60 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 RNU6-165P-201ENST00000517170 99 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 MIR548H5-201ENST00000580314 60 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 AC023934.1-201ENST00000574529 2389 ntBASIC2.35□□□□□ -2.03
LIMD1Q9UGP4 RNU6-776P-201ENST00000364403 104 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 RNU6-1022P-201ENST00000365049 104 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 RNU6-811P-201ENST00000384069 107 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 MIR635-201ENST00000384830 98 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 RNU7-153P-201ENST00000516455 62 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 MIR4422-201ENST00000581938 83 ntBASIC2.34□□□□□ -2.03
LIMD1Q9UGP4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LIMD1Q9UGP4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LIMD1Q9UGP4 MIR548U-201ENST00000390728 81 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 SNORD63B-201ENST00000411005 70 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 AL356379.1-201ENST00000414105 126 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 RNU6-295P-201ENST00000516901 104 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 SNORD92-201ENST00000585078 85 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
LIMD1Q9UGP4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 Y_RNA.283-201ENST00000364798 112 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 RNU1-78P-201ENST00000391248 165 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 RNU6-380P-201ENST00000410207 107 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 HMGN2P19-201ENST00000425149 265 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 RNA5SP82-201ENST00000516707 92 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 RNU6-765P-201ENST00000516916 99 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 MIR4796-201ENST00000580742 81 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 MIR6895-201ENST00000613497 78 ntBASIC2.32□□□□□ -2.04
LIMD1Q9UGP4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 RNU6-624P-201ENST00000363411 107 ntBASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 MIR519A1-201ENST00000385257 85 ntBASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 SNORD100-201ENST00000408573 76 ntBASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 AC008834.1-201ENST00000511612 175 ntBASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIMD1Q9UGP4 MIR21-201ENST00000362134 72 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 Y_RNA.56-201ENST00000362798 112 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 U8.13-201ENST00000390842 128 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 SNORA26.9-201ENST00000391322 122 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 RN7SKP88-201ENST00000516847 250 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 AL096840.1-201ENST00000603287 93 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 7SK.8-201ENST00000612110 250 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 7SK.11-201ENST00000615477 250 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 7SK.13-201ENST00000622040 250 ntBASIC2.3□□□□□ -2.04
LIMD1Q9UGP4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 RNU1-17P-201ENST00000363022 152 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 RNU6-934P-201ENST00000365154 107 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 Y_RNA.330-201ENST00000365230 109 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 Y_RNA.660-201ENST00000516002 120 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 RNU6-557P-201ENST00000516842 110 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 MIR6082-201ENST00000613604 109 ntBASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIMD1Q9UGP4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIMD1Q9UGP4 RNU6-1094P-201ENST00000362416 104 ntBASIC2.28□□□□□ -2.04
LIMD1Q9UGP4 SNORA25.9-201ENST00000365087 128 ntBASIC2.28□□□□□ -2.04
LIMD1Q9UGP4 Y_RNA.536-201ENST00000384621 113 ntBASIC2.28□□□□□ -2.04
LIMD1Q9UGP4 SNORD111-201ENST00000408139 94 ntBASIC2.28□□□□□ -2.04
LIMD1Q9UGP4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 205.7 ms