Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 SNORD36A-201ENST00000362874 73 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.119-201ENST00000363301 96 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 RNU6-132P-201ENST00000383863 107 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.386-201ENST00000383913 105 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 SNORD77.2-201ENST00000391045 68 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 RNU6-75P-201ENST00000515944 104 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.681-201ENST00000516445 113 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 MIR4513-201ENST00000581077 86 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 MIR1297-201ENST00000637311 77 ntBASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC39Q9UFE4 RPL23AP42-201ENST00000471152 471 ntBASIC2.13□□□□□ -2.07
CCDC39Q9UFE4 MIR3064-201ENST00000581130 66 ntBASIC2.13□□□□□ -2.07
CCDC39Q9UFE4 MIR4713-201ENST00000582691 75 ntBASIC2.13□□□□□ -2.07
CCDC39Q9UFE4 AC104996.3-201ENST00000590718 94 ntBASIC2.13□□□□□ -2.07
CCDC39Q9UFE4 MIR664A-201ENST00000626086 82 ntBASIC2.13□□□□□ -2.07
CCDC39Q9UFE4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.283-201ENST00000364798 112 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 SNORA70B-201ENST00000384210 135 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 MIR516A2-201ENST00000384888 90 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 MIR588-201ENST00000384900 83 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 MIR516A1-201ENST00000385033 90 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 RNA5SP100-201ENST00000410903 110 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 RNA5SP59-201ENST00000410922 110 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 PRELID3BP2-201ENST00000605362 201 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.12□□□□□ -2.07
CCDC39Q9UFE4 RNU6-1123P-201ENST00000362347 106 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 SNORA16.1-201ENST00000364597 132 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.264-201ENST00000364665 102 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 Y_RNA.491-201ENST00000384417 107 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 MIR563-201ENST00000385080 79 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 MIR653-201ENST00000385279 96 ntBASIC2.11□□□□□ -2.07
CCDC39Q9UFE4 AL161722.3-201ENST00000605789 2983 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU6-208P-201ENST00000362431 107 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU5F-1-201ENST00000362507 117 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU6-203P-201ENST00000384038 104 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU6-243P-201ENST00000391140 107 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU6-1254P-201ENST00000391266 104 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 RNU6-587P-201ENST00000391282 106 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 SNORA4-201ENST00000584302 138 ntBASIC2.1□□□□□ -2.07
CCDC39Q9UFE4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 RNU6-649P-201ENST00000384463 107 ntBASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 AC074348.1-201ENST00000426503 132 ntBASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 RNU6-303P-201ENST00000517091 106 ntBASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 AL357312.1-201ENST00000603879 298 ntBASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 MIR6740-201ENST00000618268 113 ntBASIC2.09□□□□□ -2.07
CCDC39Q9UFE4 MIRLET7F1-201ENST00000362202 87 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 MIR30D-201ENST00000362283 70 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 SNORD48-201ENST00000364953 64 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNA5SP126-201ENST00000365092 109 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNU6-540P-201ENST00000384622 101 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 MIR548U-201ENST00000390728 81 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNU6-360P-201ENST00000390944 104 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 SNORD90-201ENST00000391145 111 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNU2-59P-201ENST00000410482 191 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 AC015818.7-201ENST00000428754 109 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNU6-322P-201ENST00000516010 103 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 SNORA31.17-201ENST00000516953 127 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 DEFB122-202ENST00000569013 197 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 MIR4419B-201ENST00000577260 68 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 SNORD92-201ENST00000585078 85 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 AP000942.3-201ENST00000603702 160 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 AL096861.1-201ENST00000610899 123 ntBASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC39Q9UFE4 RNA5SP48-201ENST00000363969 126 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 Y_RNA.205-201ENST00000364128 113 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 SNORD30.1-201ENST00000391309 70 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 MIR1302-7-201ENST00000408841 72 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 Y_RNA.596-201ENST00000410462 109 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 AC245517.4-201ENST00000448601 281 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 RNU7-106P-201ENST00000459514 67 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 RNA5SP182-201ENST00000516064 82 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 MIR4298-201ENST00000584380 73 ntBASIC2.07□□□□□ -2.08
CCDC39Q9UFE4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC39Q9UFE4 MIR194-1-201ENST00000384892 85 ntBASIC2.06□□□□□ -2.08
CCDC39Q9UFE4 RNU6-466P-201ENST00000391224 103 ntBASIC2.06□□□□□ -2.08
CCDC39Q9UFE4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC39Q9UFE4 SNORD111.1-201ENST00000516421 86 ntBASIC2.06□□□□□ -2.08
CCDC39Q9UFE4 Y_RNA.12-201ENST00000362393 112 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 RNA5SP363-201ENST00000365072 115 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 MIR518E-201ENST00000385252 88 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 RNU6-1165P-201ENST00000410119 107 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 AC004965.1-201ENST00000413033 213 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 MIR3192-201ENST00000584920 77 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.05□□□□□ -2.08
CCDC39Q9UFE4 SNORD114-1-201ENST00000362705 72 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU6-957P-201ENST00000363652 99 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU6-800P-201ENST00000384473 103 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU6-1241P-201ENST00000384536 107 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU1-41P-201ENST00000516161 162 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 RNU1-48P-201ENST00000516400 162 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 SNORA44.1-201ENST00000517031 108 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 YWHAEP2-201ENST00000580066 112 ntBASIC2.04□□□□□ -2.08
CCDC39Q9UFE4 YWHAEP3-201ENST00000582767 121 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 187.2 ms