Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-309P-201ENST00000364573 106 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 Y_RNA.280-201ENST00000364765 112 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 Y_RNA.366-201ENST00000365540 102 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 RNU7-164P-201ENST00000459221 62 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 SNORA25.16-201ENST00000516741 121 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 RNU6-182P-201ENST00000516970 105 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 MIR3678-201ENST00000578455 94 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 AL359881.1-201ENST00000602916 267 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 AC098479.1-201ENST00000609225 154 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 AC092634.7-201ENST00000621022 103 ntBASIC0.38□□□□□ -2.35
LIME1Q9H400 MIRLET7D-201ENST00000362263 87 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 Y_RNA.174-201ENST00000363781 105 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNA5SP517-201ENST00000364724 117 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 Y_RNA.298-201ENST00000364960 107 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNA5SP117-201ENST00000365294 118 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNU6-1130P-201ENST00000365434 107 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 SNORD18B-201ENST00000365659 72 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNU6-449P-201ENST00000383914 107 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 SNORA32-201ENST00000384072 121 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNU6-291P-201ENST00000384720 107 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 RNU6-135P-201ENST00000516769 101 ntBASIC0.37□□□□□ -2.35
LIME1Q9H400 SNORD114-10-201ENST00000363409 72 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 Y_RNA.299-201ENST00000364973 94 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 SNORA72.6-201ENST00000384520 129 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 Y_RNA.536-201ENST00000384621 113 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 SNORD67.1-201ENST00000516618 108 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 AC108081.1-201ENST00000604358 221 ntBASIC0.36□□□□□ -2.35
LIME1Q9H400 SNORA36.1-201ENST00000363424 132 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 SNORA8.2-201ENST00000384372 139 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 MIR518A1-201ENST00000385068 85 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 RNU4-69P-201ENST00000410677 143 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 SNORA40.8-201ENST00000411034 126 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 HAR1A.1-201ENST00000459583 118 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 SNORA62.5-201ENST00000516634 120 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 SNORA31.14-201ENST00000516728 116 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 AC138749.4-201ENST00000563970 127 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 MTND5P34-201ENST00000568888 325 ntBASIC0.35□□□□□ -2.35
LIME1Q9H400 RNU4-58P-201ENST00000363192 141 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNA5SP133-201ENST00000363368 119 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 SNORD118-201ENST00000363593 134 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNU6-151P-201ENST00000364158 107 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 SNORD116-18-201ENST00000383961 92 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNU6-886P-201ENST00000384319 105 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNU6-460P-201ENST00000391158 108 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNA5SP63-201ENST00000391225 112 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 RNY4P20-201ENST00000516678 93 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 MIR6828-201ENST00000636181 60 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 U6.109-201ENST00000636749 87 ntBASIC0.34□□□□□ -2.36
LIME1Q9H400 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
LIME1Q9H400 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.33□□□□□ -2.36
LIME1Q9H400 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
LIME1Q9H400 RNY1P2-201ENST00000364820 117 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 Y_RNA.567-201ENST00000384736 106 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 RNU6-469P-201ENST00000516253 101 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 Y_RNA.697-201ENST00000516776 113 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 RNU6-794P-201ENST00000517261 64 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 MIR3144-201ENST00000579460 79 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 MIR3121-201ENST00000579680 77 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 AL137067.1-201ENST00000615933 120 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 AP001340.1-201ENST00000624405 217 ntBASIC0.33□□□□□ -2.36
LIME1Q9H400 RNU6-915P-201ENST00000364943 103 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 RNU6-804P-201ENST00000384286 107 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 Y_RNA.555-201ENST00000384673 110 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 RNU6-535P-201ENST00000384722 107 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 MIR644A-201ENST00000385262 94 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 RNU6-679P-201ENST00000391003 106 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 SNORD71-201ENST00000411292 86 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 RNU6-531P-201ENST00000516694 104 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 AC022523.2-201ENST00000561045 150 ntBASIC0.32□□□□□ -2.36
LIME1Q9H400 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 Y_RNA.294-201ENST00000364916 102 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 Y_RNA.398-201ENST00000383952 99 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 MIRLET7F2-201ENST00000385277 83 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 RNA5SP285-201ENST00000516619 119 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 SCARNA16.5-201ENST00000517114 183 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 RNA5SP47-201ENST00000517230 109 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 MIR4639-201ENST00000584938 69 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 AC023932.2-201ENST00000603176 175 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 SNORA25.18-201ENST00000607153 114 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 AC067863.3-201ENST00000624172 122 ntBASIC0.31□□□□□ -2.36
LIME1Q9H400 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 Y_RNA.150-201ENST00000363562 102 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 RNU4-67P-201ENST00000364569 141 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 Y_RNA.270-201ENST00000364693 104 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 Y_RNA.400-201ENST00000383963 111 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 RNU6-1104P-201ENST00000384723 104 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 MIR206-201ENST00000384872 86 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 MIR569-201ENST00000385228 96 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 RNU6-863P-201ENST00000515989 104 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 SNORA25.12-201ENST00000516202 82 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 IGKV1-22-201ENST00000524313 326 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 MIR548X2-201ENST00000579776 100 ntBASIC0.3□□□□□ -2.36
LIME1Q9H400 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.3□□□□□ -2.36
LIME1Q9H400 RNU6-1327P-201ENST00000365302 105 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 SNORD28-201ENST00000384706 75 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 RNU6-1321P-201ENST00000390905 107 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 SNORD77B-201ENST00000391112 67 ntBASIC0.29□□□□□ -2.36
LIME1Q9H400 MIR513C-201ENST00000401352 84 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms