Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 MIR30D-201ENST00000362283 70 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.168-201ENST00000363740 102 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-580P-201ENST00000365159 107 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.348-201ENST00000365403 103 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.659-201ENST00000515994 113 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-970P-201ENST00000516312 107 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.694-201ENST00000516677 117 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 RNA5SP170-201ENST00000517150 101 ntBASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.64□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.107-201ENST00000363190 121 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 SNORD45B-201ENST00000364617 72 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 MIR34C-201ENST00000384831 77 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 SNORA75.2-201ENST00000391138 150 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 SNORA75.3-201ENST00000391231 150 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 MRPL35P3-201ENST00000421557 364 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 AL591704.2-201ENST00000421658 181 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 UBL5P1-201ENST00000507979 193 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 MIR6078-201ENST00000611069 100 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 MIR376B-201ENST00000614515 100 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 PVT1_3.1-201ENST00000620853 95 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 MIR2052-201ENST00000636055 55 ntBASIC1.63□□□□□ -2.15
NKX2-4Q9H2Z4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-1298P-201ENST00000362456 101 ntBASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.93-201ENST00000363066 109 ntBASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 MIR18B-201ENST00000454574 71 ntBASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 AC012493.3-201ENST00000604494 112 ntBASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 uc_338.6-201ENST00000613544 171 ntBASIC1.62□□□□□ -2.15
NKX2-4Q9H2Z4 SNORD113.3-201ENST00000364630 78 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-905P-201ENST00000384434 107 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-910P-201ENST00000390844 107 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 AL354695.1-201ENST00000427935 228 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-158P-201ENST00000517104 100 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 AP001362.1-201ENST00000625165 124 ntBASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.61□□□□□ -2.15
NKX2-4Q9H2Z4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 SNORD38.1-201ENST00000363863 68 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 SNORD38.2-201ENST00000384470 69 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 SNORA80D-201ENST00000384488 135 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 U8.15-201ENST00000390947 134 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 RNY4P30-201ENST00000410216 95 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 AC012676.2-201ENST00000619258 186 ntBASIC1.6□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-640P-201ENST00000363693 105 ntBASIC1.59□□□□□ -2.15
NKX2-4Q9H2Z4 RNY1P2-201ENST00000364820 117 ntBASIC1.59□□□□□ -2.15
NKX2-4Q9H2Z4 MTATP8P2-201ENST00000435212 202 ntBASIC1.59□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-795P-201ENST00000516323 103 ntBASIC1.59□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-170P-201ENST00000362832 104 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 AC004941.2-201ENST00000427009 228 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 RNU7-21P-201ENST00000459430 62 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6-1006P-201ENST00000516998 103 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 SNORA70.22-201ENST00000517160 124 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 AC036111.3-201ENST00000526389 112 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 U6.109-201ENST00000636749 87 ntBASIC1.58□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.95-201ENST00000363079 95 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.247-201ENST00000364500 92 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD48-201ENST00000364953 64 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 MIR520E-201ENST00000384867 87 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD111-201ENST00000408139 94 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD93-201ENST00000408813 74 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 RNU7-90P-201ENST00000459216 62 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 RPS29P1-201ENST00000465274 159 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 AC023827.1-201ENST00000569247 97 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 MIR3122-201ENST00000577243 73 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 AC012531.4-201ENST00000616509 177 ntBASIC1.57□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.43-201ENST00000362670 111 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.96-201ENST00000363092 109 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 RNA5SP133-201ENST00000363368 119 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 RNU1-93P-201ENST00000364704 169 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD83.1-201ENST00000411362 77 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 snoU13.21-201ENST00000459368 105 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD79.1-201ENST00000516069 84 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 MTND5P40-201ENST00000559945 246 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 AC138749.4-201ENST00000563970 127 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 AC106800.4-201ENST00000614905 153 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 AC091304.10-201ENST00000641554 121 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 AC023934.1-201ENST00000574529 2389 ntBASIC1.56□□□□□ -2.16
NKX2-4Q9H2Z4 SNORD114-27-201ENST00000363766 70 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6-934P-201ENST00000365154 107 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 MIR222-201ENST00000384992 110 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 MIR1304-201ENST00000408243 91 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 AC096949.1-201ENST00000412047 152 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 SPINT5P-201ENST00000448174 155 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 MIR4439-201ENST00000583746 80 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6-90P-201ENST00000606352 106 ntBASIC1.55□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6-1255P-201ENST00000363434 112 ntBASIC1.54□□□□□ -2.16
NKX2-4Q9H2Z4 MIR548G-201ENST00000408442 89 ntBASIC1.54□□□□□ -2.16
NKX2-4Q9H2Z4 MIR1257-201ENST00000408490 117 ntBASIC1.54□□□□□ -2.16
NKX2-4Q9H2Z4 RNU7-185P-201ENST00000459215 60 ntBASIC1.54□□□□□ -2.16
NKX2-4Q9H2Z4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.54□□□□□ -2.16
NKX2-4Q9H2Z4 AC008163.1-202ENST00000636004 2889 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 RNU1-36P-201ENST00000365130 165 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 RNU6-994P-201ENST00000410507 111 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 AC109327.2-201ENST00000448339 378 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms