Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RNA5SP121-201ENST00000516537 101 ntBASIC0.66□□□□□ -2.3
USP44Q9H0E7 RNU6-448P-201ENST00000517052 107 ntBASIC0.66□□□□□ -2.3
USP44Q9H0E7 RN7SL793P-201ENST00000583259 296 ntBASIC0.66□□□□□ -2.3
USP44Q9H0E7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.66□□□□□ -2.3
USP44Q9H0E7 MIR18A-201ENST00000362310 71 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 RNU6-647P-201ENST00000364243 107 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 RNY1P8-201ENST00000383970 114 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 MIR216A-201ENST00000385063 110 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 RNA5SP193-201ENST00000410353 107 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 AL158147.1-201ENST00000443970 75 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 SNORA25.16-201ENST00000516741 121 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 AP003327.1-201ENST00000529684 127 ntBASIC0.65□□□□□ -2.31
USP44Q9H0E7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
USP44Q9H0E7 Y_RNA.343-201ENST00000365354 112 ntBASIC0.64□□□□□ -2.31
USP44Q9H0E7 SNORA72.6-201ENST00000384520 129 ntBASIC0.64□□□□□ -2.31
USP44Q9H0E7 MT-TI-201ENST00000387365 69 ntBASIC0.64□□□□□ -2.31
USP44Q9H0E7 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
USP44Q9H0E7 RNU6-257P-201ENST00000410238 98 ntBASIC0.64□□□□□ -2.31
USP44Q9H0E7 AC105081.1-201ENST00000617727 106 ntBASIC0.64□□□□□ -2.31
USP44Q9H0E7 SNORD114-10-201ENST00000363409 72 ntBASIC0.63□□□□□ -2.31
USP44Q9H0E7 SNORA36.2-201ENST00000384004 127 ntBASIC0.63□□□□□ -2.31
USP44Q9H0E7 MIR936-201ENST00000401264 98 ntBASIC0.63□□□□□ -2.31
USP44Q9H0E7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.63□□□□□ -2.31
USP44Q9H0E7 RN7SKP12-201ENST00000516275 143 ntBASIC0.63□□□□□ -2.31
USP44Q9H0E7 RNU6-765P-201ENST00000516916 99 ntBASIC0.63□□□□□ -2.31
USP44Q9H0E7 RNA5SP133-201ENST00000363368 119 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 MIR140-201ENST00000385282 100 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 AL157398.1-201ENST00000452981 186 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 RNU6-781P-201ENST00000516377 101 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 AC138749.4-201ENST00000563970 127 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 TUG1_4.1-201ENST00000619464 181 ntBASIC0.62□□□□□ -2.31
USP44Q9H0E7 RNU6-235P-201ENST00000362644 107 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 RNA5SP117-201ENST00000365294 118 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 RNY1P4-201ENST00000384595 115 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 SNORA40-201ENST00000388090 126 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 MIR1263-201ENST00000408324 86 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 RNU6-733P-201ENST00000410759 104 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 RNU6-531P-201ENST00000516694 104 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 U6.109-201ENST00000636749 87 ntBASIC0.61□□□□□ -2.31
USP44Q9H0E7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
USP44Q9H0E7 RNU6-1062P-201ENST00000383908 107 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 MIR206-201ENST00000384872 86 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 SNORD77B-201ENST00000391112 67 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 RNU4-54P-201ENST00000516428 129 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 MTND5P34-201ENST00000568888 325 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 AC087741.2-201ENST00000619415 172 ntBASIC0.6□□□□□ -2.31
USP44Q9H0E7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU6-774P-201ENST00000363238 107 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 Y_RNA.205-201ENST00000364128 113 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU6-1321P-201ENST00000390905 107 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU6-1307P-201ENST00000391012 103 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNA5SP136-201ENST00000410906 107 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU6-229P-201ENST00000516614 102 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU6-135P-201ENST00000516769 101 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 RNU7-6P-201ENST00000516845 62 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 DEFB131E-201ENST00000532329 154 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 MIR3133-201ENST00000583157 78 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 uc_338.16-201ENST00000621804 95 ntBASIC0.59□□□□□ -2.31
USP44Q9H0E7 Y_RNA.198-201ENST00000364013 98 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 RNU6-616P-201ENST00000384353 107 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 Y_RNA.536-201ENST00000384621 113 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 RNU6-291P-201ENST00000384720 107 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 Y_RNA.586-201ENST00000391146 98 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 RNU6-1194P-201ENST00000516208 104 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 MIR3678-201ENST00000578455 94 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.58□□□□□ -2.32
USP44Q9H0E7 Y_RNA.32-201ENST00000362589 110 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 RNU4-58P-201ENST00000363192 141 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.119-201ENST00000363301 96 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.174-201ENST00000363781 105 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 RNY1P2-201ENST00000364820 117 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.528-201ENST00000384575 108 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 MIRLET7F2-201ENST00000385277 83 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 RNU6-735P-201ENST00000410612 107 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.697-201ENST00000516776 113 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.703-201ENST00000516846 111 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 MIR3163-201ENST00000581592 73 ntBASIC0.57□□□□□ -2.32
USP44Q9H0E7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
USP44Q9H0E7 Y_RNA.213-201ENST00000364178 111 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 SNORD58C-201ENST00000365223 64 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-945P-201ENST00000383947 107 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 Y_RNA.448-201ENST00000384185 108 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-535P-201ENST00000384722 107 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 MIR644A-201ENST00000385262 94 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-679P-201ENST00000391003 106 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-1211P-201ENST00000459179 105 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU7-2P-201ENST00000516096 62 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 SNORA31.14-201ENST00000516728 116 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-1234P-201ENST00000516877 103 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 RNU6-971P-201ENST00000516920 106 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 Y_RNA.773-201ENST00000607168 90 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 AC243829.3-201ENST00000622177 108 ntBASIC0.56□□□□□ -2.32
USP44Q9H0E7 SNORD115-19-201ENST00000363098 82 ntBASIC0.55□□□□□ -2.32
USP44Q9H0E7 SNORD115-18-201ENST00000363293 82 ntBASIC0.55□□□□□ -2.32
USP44Q9H0E7 SNORD115-17-201ENST00000364612 82 ntBASIC0.55□□□□□ -2.32
USP44Q9H0E7 RNU6-746P-201ENST00000384112 109 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms