Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR18B-201ENST00000454574 71 ntBASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 RNU1-98P-201ENST00000458992 160 ntBASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 MIR4419B-201ENST00000577260 68 ntBASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 MIR4500-201ENST00000579472 76 ntBASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.67□□□□□ -2.14
PTCHD1Q96NR3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 Y_RNA.119-201ENST00000363301 96 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 RNU6-820P-201ENST00000384273 107 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 SNORA2B-201ENST00000384583 137 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 SNORA31.2-201ENST00000516019 134 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 RN7SKP12-201ENST00000516275 143 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 RNU6-902P-201ENST00000517212 91 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
PTCHD1Q96NR3 MIR494-201ENST00000349529 81 ntBASIC1.65□□□□□ -2.15
PTCHD1Q96NR3 Y_RNA.330-201ENST00000365230 109 ntBASIC1.65□□□□□ -2.15
PTCHD1Q96NR3 MIR764-201ENST00000390811 85 ntBASIC1.65□□□□□ -2.15
PTCHD1Q96NR3 MIR8081-201ENST00000611533 95 ntBASIC1.65□□□□□ -2.15
PTCHD1Q96NR3 RNY1P10-201ENST00000363268 113 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 RNU6-1125P-201ENST00000363601 107 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 RNU6-480P-201ENST00000384332 107 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 SNORD116-22-201ENST00000384430 92 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 SNORD93-201ENST00000408813 74 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 SNORA25.15-201ENST00000516487 89 ntBASIC1.64□□□□□ -2.15
PTCHD1Q96NR3 MIR181B2-201ENST00000385004 89 ntBASIC1.63□□□□□ -2.15
PTCHD1Q96NR3 SNORA75.2-201ENST00000391138 150 ntBASIC1.63□□□□□ -2.15
PTCHD1Q96NR3 SNORA75.3-201ENST00000391231 150 ntBASIC1.63□□□□□ -2.15
PTCHD1Q96NR3 RNA5SP458-201ENST00000516188 119 ntBASIC1.63□□□□□ -2.15
PTCHD1Q96NR3 AC008163.1-202ENST00000636004 2889 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 SNORD113.3-201ENST00000364630 78 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 SNRPGP12-201ENST00000449481 213 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 snoU13.21-201ENST00000459368 105 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 MIR4491-201ENST00000581087 68 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 MIR502-201ENST00000606349 86 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.62□□□□□ -2.15
PTCHD1Q96NR3 RNY1P1-201ENST00000364372 112 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 RNU1-36P-201ENST00000365130 165 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 Y_RNA.363-201ENST00000365529 113 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 RNU6-402P-201ENST00000410678 103 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 AC036111.3-201ENST00000526389 112 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 AL513043.2-201ENST00000573941 143 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 AC020891.4-201ENST00000605745 93 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 IGLL4P-201ENST00000614590 133 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 AC023934.1-201ENST00000574529 2389 ntBASIC1.61□□□□□ -2.15
PTCHD1Q96NR3 RNA5SP173-201ENST00000364857 136 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 RNU6-53P-201ENST00000365367 106 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 RNU6-571P-201ENST00000384128 107 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 Y_RNA.588-201ENST00000391254 102 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 SNORD83.1-201ENST00000411362 77 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 BX276092.1-201ENST00000427368 251 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 RNU6-850P-201ENST00000516934 103 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 MIR4668-201ENST00000582284 70 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 AC025521.1-201ENST00000621624 286 ntBASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.6□□□□□ -2.15
PTCHD1Q96NR3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 RNU6-403P-201ENST00000363163 104 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 SNORD48-201ENST00000364953 64 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 RNU6-675P-201ENST00000384236 104 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 SNORA72.6-201ENST00000384520 129 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 AL591704.2-201ENST00000421658 181 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 RNU7-185P-201ENST00000459215 60 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 RNU6-531P-201ENST00000516694 104 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 SNORA25.16-201ENST00000516741 121 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.59□□□□□ -2.15
PTCHD1Q96NR3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 Y_RNA.57-201ENST00000362806 113 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNU4-58P-201ENST00000363192 141 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNU6-219P-201ENST00000364728 107 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNU6-934P-201ENST00000365154 107 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNY1P4-201ENST00000384595 115 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 MIR1257-201ENST00000408490 117 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 Y_RNA.609-201ENST00000410669 89 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNU4-83P-201ENST00000410863 133 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 MIR8066-201ENST00000617280 78 ntBASIC1.58□□□□□ -2.16
PTCHD1Q96NR3 RNU1-17P-201ENST00000363022 152 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNA5SP190-201ENST00000365222 118 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 SNORA80D-201ENST00000384488 135 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNU6-1152P-201ENST00000384576 107 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNU6-910P-201ENST00000390844 107 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 Y_RNA.620-201ENST00000411009 88 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNU6-592P-201ENST00000411333 103 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNU7-21P-201ENST00000459430 62 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNU6-267P-201ENST00000516714 103 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 AC023827.1-201ENST00000569247 97 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 AC106800.4-201ENST00000614905 153 ntBASIC1.57□□□□□ -2.16
PTCHD1Q96NR3 RNA5SP99-201ENST00000364020 114 ntBASIC1.56□□□□□ -2.16
PTCHD1Q96NR3 SNORD111-201ENST00000408139 94 ntBASIC1.56□□□□□ -2.16
PTCHD1Q96NR3 AC022137.1-201ENST00000483735 151 ntBASIC1.56□□□□□ -2.16
PTCHD1Q96NR3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.56□□□□□ -2.16
PTCHD1Q96NR3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
PTCHD1Q96NR3 Y_RNA.73-201ENST00000362910 113 ntBASIC1.55□□□□□ -2.16
PTCHD1Q96NR3 RNU6-573P-201ENST00000383938 106 ntBASIC1.55□□□□□ -2.16
PTCHD1Q96NR3 RNU6-997P-201ENST00000384725 107 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 267.4 ms