Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU7-129P-201ENST00000516128 62 ntBASIC-0.06□□□□□ -2.42
CCDC54Q8NEL0 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.06□□□□□ -2.42
CCDC54Q8NEL0 RNU6-327P-201ENST00000516270 127 ntBASIC-0.06□□□□□ -2.42
CCDC54Q8NEL0 AC141273.2-201ENST00000618989 130 ntBASIC-0.06□□□□□ -2.42
CCDC54Q8NEL0 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.06□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.193-201ENST00000363979 102 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.307-201ENST00000365022 117 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 MIR145-201ENST00000384967 88 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 TRAJ51-201ENST00000504127 63 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 RNU4-71P-201ENST00000516258 113 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 MIR4503-201ENST00000582187 83 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 MIR6718-201ENST00000616153 80 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 MIR371B-201ENST00000638082 66 ntBASIC-0.07□□□□□ -2.42
CCDC54Q8NEL0 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 RNU6-309P-201ENST00000364573 106 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 MIR593-201ENST00000384856 100 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 AC130289.1-201ENST00000577321 73 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 MIR1273G-201ENST00000577677 100 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 AC108081.1-201ENST00000604358 221 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 AC098479.1-201ENST00000609225 154 ntBASIC-0.08□□□□□ -2.42
CCDC54Q8NEL0 RNA5SP325-201ENST00000363756 130 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 RNU6-818P-201ENST00000364837 108 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 MIR206-201ENST00000384872 86 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 RNU6-269P-201ENST00000391077 97 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 RNA5SP63-201ENST00000391225 112 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 AC021443.1-201ENST00000604478 211 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 AC011603.4-201ENST00000611325 277 ntBASIC-0.09□□□□□ -2.42
CCDC54Q8NEL0 MIR101-2-201ENST00000362195 79 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 RNU6-429P-201ENST00000384582 108 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 SNORD41.1-201ENST00000391000 69 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 AL118496.2-201ENST00000448300 230 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 RNU7-164P-201ENST00000459221 62 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 RNU7-104P-201ENST00000459398 79 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 RNU7-121P-201ENST00000516604 62 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 RNU6-782P-201ENST00000516852 104 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 AC138907.4-201ENST00000570107 226 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 MIR3925-201ENST00000584674 77 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 uc_338.28-201ENST00000612082 187 ntBASIC-0.1□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.36-201ENST00000362602 112 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.118-201ENST00000363300 101 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 RNU6-1011P-201ENST00000384668 107 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 MT-TI-201ENST00000387365 69 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 SNORA75.5-201ENST00000391291 81 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 RNU4-69P-201ENST00000410677 143 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 AC138869.1-201ENST00000568623 124 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 MIR548AD-201ENST00000584780 82 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 AC009779.6-201ENST00000603972 165 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 MIR8087-201ENST00000612745 78 ntBASIC-0.11□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 RNU6-312P-201ENST00000364629 107 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 RNU6-449P-201ENST00000383914 107 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 BX276092.1-201ENST00000427368 251 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 AC107027.2-201ENST00000512197 115 ntBASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.12□□□□□ -2.43
CCDC54Q8NEL0 RNU6-929P-201ENST00000384429 107 ntBASIC-0.13□□□□□ -2.43
CCDC54Q8NEL0 IGKV1-22-201ENST00000524313 326 ntBASIC-0.13□□□□□ -2.43
CCDC54Q8NEL0 MIR4500-201ENST00000579472 76 ntBASIC-0.13□□□□□ -2.43
CCDC54Q8NEL0 U4.1-201ENST00000620349 87 ntBASIC-0.13□□□□□ -2.43
CCDC54Q8NEL0 MIR6844-201ENST00000637122 62 ntBASIC-0.13□□□□□ -2.43
CCDC54Q8NEL0 RNU4-84P-201ENST00000364200 139 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 RNU6-865P-201ENST00000364772 107 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 SNORA20.1-201ENST00000364790 130 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 RNU6-616P-201ENST00000384353 107 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MIR610-201ENST00000385139 96 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 HMGN2P22-201ENST00000427588 175 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MTND3P2-201ENST00000438452 342 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 RNU7-48P-201ENST00000458875 63 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MIR548H5-201ENST00000580314 60 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MIR5190-201ENST00000581537 80 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MIR4677-201ENST00000584153 80 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 MIR376B-201ENST00000614515 100 ntBASIC-0.14□□□□□ -2.43
CCDC54Q8NEL0 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 MIR599-201ENST00000385069 95 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 RNU6-239P-201ENST00000390990 99 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 RNY4P20-201ENST00000516678 93 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 MIR3646-201ENST00000578301 84 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.15□□□□□ -2.43
CCDC54Q8NEL0 RNU7-197P-201ENST00000458836 62 ntBASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 RNU7-106P-201ENST00000459514 67 ntBASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 RNU6-1045P-201ENST00000516321 107 ntBASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 MIR3920-201ENST00000581751 86 ntBASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 AC067863.3-201ENST00000624172 122 ntBASIC-0.16□□□□□ -2.44
CCDC54Q8NEL0 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms