Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RNU6-480P-201ENST00000384332 107 ntBASIC-0.67□□□□□ -2.52
ZNF404Q494X3 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.67□□□□□ -2.52
ZNF404Q494X3 Z95118.1-201ENST00000421372 247 ntBASIC-0.67□□□□□ -2.52
ZNF404Q494X3 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-0.67□□□□□ -2.52
ZNF404Q494X3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.67□□□□□ -2.52
ZNF404Q494X3 AC069503.3-201ENST00000618674 145 ntBASIC-0.67□□□□□ -2.52
ZNF404Q494X3 uc_338.10-201ENST00000621872 182 ntBASIC-0.67□□□□□ -2.52
ZNF404Q494X3 RNU6-103P-201ENST00000363686 107 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.68□□□□□ -2.52
ZNF404Q494X3 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 AL121914.1-201ENST00000450188 156 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.68□□□□□ -2.52
ZNF404Q494X3 MTND5P22-201ENST00000458380 195 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 MIR4500-201ENST00000579472 76 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 AL365265.1-201ENST00000621045 234 ntBASIC-0.68□□□□□ -2.52
ZNF404Q494X3 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 RNU6-651P-201ENST00000411040 105 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 AC093423.1-201ENST00000440817 142 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 MIR1270-201ENST00000459320 83 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 RNU6-758P-201ENST00000516292 89 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 RNA5SP66-201ENST00000517178 101 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 MIR4473-201ENST00000583731 91 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 MIR4795-201ENST00000584182 89 ntBASIC-0.69□□□□□ -2.52
ZNF404Q494X3 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 SNORD42.2-201ENST00000365570 69 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 Y_RNA.505-201ENST00000384489 102 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 Y_RNA.590-201ENST00000410140 107 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 RNU7-195P-201ENST00000458793 62 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 RNU7-48P-201ENST00000458875 63 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 MTND3P22-201ENST00000510932 243 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 AL442663.2-201ENST00000554385 511 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 MIR4282-201ENST00000583613 67 ntBASIC-0.7□□□□□ -2.52
ZNF404Q494X3 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.7□□□□□ -2.52
ZNF404Q494X3 SNORD114-14-201ENST00000362723 75 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 SNORD114-29-201ENST00000364819 70 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 RNU6-1283P-201ENST00000365314 105 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 SNORD63B-201ENST00000411005 70 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-0.71□□□□□ -2.52
ZNF404Q494X3 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 RNU6-175P-201ENST00000516896 107 ntBASIC-0.71□□□□□ -2.52
ZNF404Q494X3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.71□□□□□ -2.52
ZNF404Q494X3 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 Y_RNA.455-201ENST00000384230 98 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 MIR617-201ENST00000385030 97 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 MIR519E-201ENST00000385075 84 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 MIR1265-201ENST00000408444 86 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 RNA5SP236-201ENST00000516169 116 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 RNU2-35P-201ENST00000516446 142 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 RNU6-988P-201ENST00000519081 107 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 YWHAEP2-201ENST00000580066 112 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 MIR548AG2-201ENST00000581228 64 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 MIR4744-201ENST00000581563 82 ntBASIC-0.72□□□□□ -2.52
ZNF404Q494X3 RNU6-170P-201ENST00000362832 104 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 MIR539-201ENST00000365690 78 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 RNU6-524P-201ENST00000384270 107 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 RNU6-455P-201ENST00000384681 107 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 MIR206-201ENST00000384872 86 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 RNU4-69P-201ENST00000410677 143 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 MIR4436A-201ENST00000585278 85 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 AC096720.1-201ENST00000604441 183 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 AC108676.2-201ENST00000605225 163 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 U2.14-201ENST00000615943 113 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 AP001362.1-201ENST00000625165 124 ntBASIC-0.73□□□□□ -2.53
ZNF404Q494X3 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 RNU6-690P-201ENST00000365242 106 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 SNORD115-44-201ENST00000365391 82 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 RNU6-47P-201ENST00000383866 107 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 AC113195.1-201ENST00000579952 141 ntBASIC-0.74□□□□□ -2.53
ZNF404Q494X3 RNU6-735P-201ENST00000410612 107 ntBASIC-0.75□□□□□ -2.53
ZNF404Q494X3 RNA5SP25-201ENST00000410815 110 ntBASIC-0.75□□□□□ -2.53
ZNF404Q494X3 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.75□□□□□ -2.53
ZNF404Q494X3 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.75□□□□□ -2.53
ZNF404Q494X3 AC011603.4-201ENST00000611325 277 ntBASIC-0.75□□□□□ -2.53
ZNF404Q494X3 AC093726.3-201ENST00000637588 150 ntBASIC-0.75□□□□□ -2.53
ZNF404Q494X3 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 Y_RNA.431-201ENST00000384086 102 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 RNU6-571P-201ENST00000384128 107 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 MIR9-2-201ENST00000384838 87 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 RNU6-578P-201ENST00000390980 103 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 RNU7-106P-201ENST00000459514 67 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 MIR548AE1-201ENST00000583292 70 ntBASIC-0.76□□□□□ -2.53
ZNF404Q494X3 SNORD95.1-201ENST00000364099 68 ntBASIC-0.77□□□□□ -2.53
ZNF404Q494X3 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.77□□□□□ -2.53
ZNF404Q494X3 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.77□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 172.8 ms