Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC244098.3-201ENST00000424803 96 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 SNORA25.16-201ENST00000516741 121 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 Y_RNA.42-201ENST00000362660 108 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 Y_RNA.71-201ENST00000362892 104 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 Y_RNA.346-201ENST00000365385 112 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 RNU4-61P-201ENST00000411243 107 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 AC090897.1-201ENST00000580909 226 ntBASIC1.13□□□□□ -2.23
SF3A1Q15459 MTND5P18-201ENST00000445624 1801 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 Y_RNA.448-201ENST00000384185 108 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 MIR206-201ENST00000384872 86 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 RPL39P28-201ENST00000465655 155 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 RNU6-448P-201ENST00000517052 107 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 AC103810.9-201ENST00000606688 112 ntBASIC1.12□□□□□ -2.23
SF3A1Q15459 Y_RNA.218-201ENST00000364218 104 ntBASIC1.11□□□□□ -2.23
SF3A1Q15459 Y_RNA.525-201ENST00000384570 113 ntBASIC1.11□□□□□ -2.23
SF3A1Q15459 MIR3612-201ENST00000579753 87 ntBASIC1.11□□□□□ -2.23
SF3A1Q15459 MIR6767-201ENST00000637302 66 ntBASIC1.11□□□□□ -2.23
SF3A1Q15459 RNU4-58P-201ENST00000363192 141 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 MIR598-201ENST00000384868 97 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 MIRLET7F2-201ENST00000385277 83 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 RNU6-1321P-201ENST00000390905 107 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 RNU6-735P-201ENST00000410612 107 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 Y_RNA.630-201ENST00000411370 108 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 RNU7-2P-201ENST00000516096 62 ntBASIC1.1□□□□□ -2.23
SF3A1Q15459 SNORD114-26-201ENST00000363543 72 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 SNORA36.2-201ENST00000384004 127 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 RNU6-406P-201ENST00000516470 107 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 RNU6-531P-201ENST00000516694 104 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 Y_RNA.697-201ENST00000516776 113 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 RNU6-765P-201ENST00000516916 99 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 AC138749.4-201ENST00000563970 127 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 AC087741.2-201ENST00000619415 172 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 PVT1_3.1-201ENST00000620853 95 ntBASIC1.09□□□□□ -2.23
SF3A1Q15459 Y_RNA.127-201ENST00000363386 109 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 RNU6-865P-201ENST00000364772 107 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 RNA5SP117-201ENST00000365294 118 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 SNORD116-14-201ENST00000383894 92 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 SNORD116-17-201ENST00000383929 92 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 SNORD116-15-201ENST00000384445 92 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 RNU6-1117P-201ENST00000384525 104 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 SNORD116-19-201ENST00000384729 92 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 MIR548D2-201ENST00000384955 97 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 RNU7-48P-201ENST00000458875 63 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 RNU6-659P-201ENST00000516454 104 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 AP003327.1-201ENST00000529684 127 ntBASIC1.08□□□□□ -2.24
SF3A1Q15459 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
SF3A1Q15459 AC008267.6-201ENST00000441664 139 ntBASIC1.07□□□□□ -2.24
SF3A1Q15459 RNU6-62P-201ENST00000516526 102 ntBASIC1.07□□□□□ -2.24
SF3A1Q15459 Y_RNA.712-201ENST00000517011 92 ntBASIC1.07□□□□□ -2.24
SF3A1Q15459 SNORD115-19-201ENST00000363098 82 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 SNORD115-18-201ENST00000363293 82 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 Y_RNA.119-201ENST00000363301 96 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 SNORD115-17-201ENST00000364612 82 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 SNORD113-1-201ENST00000365321 69 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 AC002350.1-201ENST00000490759 375 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 RNU6-1194P-201ENST00000516208 104 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 Y_RNA.773-201ENST00000607168 90 ntBASIC1.06□□□□□ -2.24
SF3A1Q15459 MIR101-2-201ENST00000362195 79 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 Y_RNA.36-201ENST00000362602 112 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 RNY4P6-201ENST00000363667 96 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 RNY1P2-201ENST00000364820 117 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 RNU6-110P-201ENST00000384508 104 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 SNORD100-201ENST00000408573 76 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 RNU6-1333P-201ENST00000516162 93 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 AC013244.2-201ENST00000603396 103 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 MIR3914-2-201ENST00000637339 95 ntBASIC1.05□□□□□ -2.24
SF3A1Q15459 Y_RNA.98-201ENST00000363109 102 ntBASIC1.04□□□□□ -2.24
SF3A1Q15459 SNORD115-35-201ENST00000365122 82 ntBASIC1.04□□□□□ -2.24
SF3A1Q15459 RNU6-22P-201ENST00000384355 107 ntBASIC1.04□□□□□ -2.24
SF3A1Q15459 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.04□□□□□ -2.24
SF3A1Q15459 MTND5P34-201ENST00000568888 325 ntBASIC1.04□□□□□ -2.24
SF3A1Q15459 AL606753.1-201ENST00000427435 87 ntBASIC1.03□□□□□ -2.24
SF3A1Q15459 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.03□□□□□ -2.24
SF3A1Q15459 MIR6779-201ENST00000617283 64 ntBASIC1.03□□□□□ -2.24
SF3A1Q15459 AP001362.1-201ENST00000625165 124 ntBASIC1.03□□□□□ -2.24
SF3A1Q15459 MIR1255B1-201ENST00000636325 63 ntBASIC1.03□□□□□ -2.24
SF3A1Q15459 U6.95-201ENST00000636931 70 ntBASIC1.03□□□□□ -2.24
SF3A1Q15459 MIR18A-201ENST00000362310 71 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 RNU4-45P-201ENST00000365469 141 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 RNU6-535P-201ENST00000384722 107 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 RNU6-1307P-201ENST00000391012 103 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
SF3A1Q15459 RNU6-469P-201ENST00000516253 101 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 AL365222.1-201ENST00000614661 98 ntBASIC1.02□□□□□ -2.25
SF3A1Q15459 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.02□□□□□ -2.25
SF3A1Q15459 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
SF3A1Q15459 Y_RNA.328-201ENST00000365208 113 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 Y_RNA.536-201ENST00000384621 113 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 Y_RNA.563-201ENST00000384707 108 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 RNU6-1168P-201ENST00000390831 104 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 RNU6-479P-201ENST00000516348 105 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 RNU6-521P-201ENST00000516663 105 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 MIR4500-201ENST00000579472 76 ntBASIC1.01□□□□□ -2.25
SF3A1Q15459 Y_RNA.261-201ENST00000364631 102 ntBASIC1□□□□□ -2.25
SF3A1Q15459 RNY1P8-201ENST00000383970 114 ntBASIC1□□□□□ -2.25
SF3A1Q15459 MIR532-201ENST00000385025 91 ntBASIC1□□□□□ -2.25
SF3A1Q15459 Y_RNA.649-201ENST00000459077 103 ntBASIC1□□□□□ -2.25
SF3A1Q15459 SNORD33.1-201ENST00000516213 88 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms